When the molecule does not stop

The chain that pays for nothing

Held to a fixed length, a Peierls chain pays for its ends' extra alternation with a compression of every bond. Let the length go and nothing is paid: the middle is the free infinite chain to twelve figures, the ends adjust locally — and every tail exponent comes out where the fixed chain put it, to under a thousandth. The constraint was never in the exponents. Nor is the drift in them a missing 1/b term: fitting one makes the exponent wander three times further.

Worth reading first: A ring is not the bulk · The rate that turned back.

A ring is not the bulk found the reason a Peierls chain’s middle is not its bulk. The relaxation that sets the bond lengths moves each bond by its bond order minus the chain’s mean bond order, over a stiffness K — and subtracting the mean holds the chain’s total length fixed. The ends carry extra alternation, as the chain distorts hardest where it stops found, and with the length fixed that extra alternation has to be paid for somewhere. It is paid for by every bond: a uniform compression c that goes as one over the chain’s length, −0.33/N at the softest stiffness and −0.081/N at the stiffest. Against the infinite chain at that compression, the soft middles agree to 10⁻¹¹, nothing turns back, and two tails describe every profile to its middle.

That repaired the reference. It left a question about the rule. A chain whose length is held fixed is a chain under tension, and the tension reaches every bond. Whether the tails measured against the compressed bulk — the exponents, the decay lengths — belong to how the ends heal or to the constraint that made the middle pay for them is not something the compressed bulk can answer, because the compressed bulk has the constraint built into it.

The essay named the experiment. Remove one line of the rule.

The same rule, with the length let go

The fixed-length rule is

δb=Pb−PˉK,\delta_b = \frac{P_b - \bar P}{K},

with PbP_b the bond order of bond bb and Pˉ\bar P the chain’s mean. The mean is what fixes the length: the δ sum to zero whatever the bond orders do.

The alternative replaces the chain’s own mean with a constant: the mean bond order of the infinite chain at its own, free, self-consistent alternation. Call it P0P_0. Then a bond in the deep middle of a long chain, with the infinite chain’s bond orders, moves by exactly ±d0d_0 — the free bulk’s alternation — and nothing anywhere is compressed. The ends still carry extra alternation, and now each end bond simply lengthens or shortens by its own excess bond order over P0P_0. Nothing is asked of the middle.

P0P_0 is a Bloch sum, and it carries the band’s own physics. At K = 1.1, where the free chain alternates strongly (d0d_0 = 0.285), it is 0.604. At K = 3.1, where it hardly alternates (d0d_0 = 0.011), it is 0.6364 — within three parts in ten thousand of 2/π, the bond order of a uniform chain, which is the value it must approach as the alternation vanishes. The alternation dies away with stiffness faster than any power — the electrons’ gain near zero alternation carries a logarithm, so the self-consistent alternation falls exponentially as the springs stiffen — and by the stiff end the free chain is within a hair of uniform and its mean bond order is the uniform chain’s. The rule’s own fixed point is checked: P1P_1 − P0P_0 over K returns d0d_0 to 10⁻¹⁰ at every stiffness.

The chain is the published one: 320 sites, Hückel, half filled, iterated to a change below 10⁻¹² a bond. It takes between 164 and 306 iterations, a few more than the fixed chain.

The middle stops paying

Held to its length, the chain pays for its ends everywhere; free, only at the ends. The uniform part of each bond's change — the mean of two neighbours, which cancels the alternation — along the first 100 bonds of a chain of 320 at stiffness 1.6. With the length fixed, every bond is compressed by -5.80e-4 so that the ends' extra alternation costs nothing overall. With the length free the middle carries no shift at all (8.4e-13) and the ends adjust locally.
Fig. 1 The uniform part of each bond’s change along the first sixty bonds at K = 1.6. Held to its length, every bond is compressed; free, the middle carries nothing.

The uniform part of a bond’s change — the mean of two neighbours, which cancels the alternation — tells where the length went. With the length fixed, it is −5.8 × 10⁻⁴ at K = 1.6 all along the chain: every bond is compressed by the same amount, as the decomposition into compression and tail showed. With the length free, it is 8 × 10⁻¹³ in the middle, which is zero, and it is non-zero only within a few decay lengths of each end, where the end bonds adjust locally to their own bond orders.

At every stiffness to K = 2.0 the free chain’s middle is the free bulk to better than 10⁻¹⁰: its uniform part is around 10⁻¹² and its alternation agrees with d0d_0 to a few times 10⁻¹¹. The fixed chain needed a bulk built at its own compression to reach that agreement. The free chain needs only the infinite chain as it is.

At the stiffest chains the middle is not bulk under either rule. At K = 3.1 the free chain’s middle sits 1.2 × 10⁻⁴ above d0d_0, the size of excess the fixed chain’s middle carries over its compressed bulk at the stiff end: two tails, each decaying more slowly than any window expected, still overlapping at bond 160. That is a property of the healing length against the chain’s length, and the rule does not touch it.

The healing is the same healing

The healing is the same whichever way the length is treated. The excess alternation over each chain's own bulk, on a logarithmic scale, along half of a chain of 320 at three stiffnesses. Each fixed-length profile, read against its compressed bulk, is drawn wide and faint; the free-length profile, read against the free bulk, is drawn over it. They cannot be told apart at this scale down to the relaxation's floor of 10⁻⁸.
Fig. 2 The excess alternation over each chain’s own bulk, at three stiffnesses: the fixed chain drawn wide and faint, the free chain over it. They cannot be told apart down to the floor.

The excess over bulk is what the tails are fitted to, and the two rules give the same excess. At K = 1.6, 2.2 and 2.8 the free chain’s excess over d0d_0 and the fixed chain’s excess over its compressed bulk lie on top of one another on a logarithmic scale, down to the relaxation’s floor of 10⁻⁸.

The end bond itself hardly notices. Its alternation is 0.31757 free and 0.31775 fixed at K = 1.1, the largest difference of any stiffness; at K = 3.1 the two agree to five figures. The compression that the fixed chain spreads over 319 bonds is, at the end bond, a correction in the fourth decimal place.

Every exponent where it was

Freeing the chain's length leaves every tail exponent where it was. The tail exponent p of a two-ended fit A·b^(−p)·e^(−b/λ) from bond 6, at ten stiffnesses, for the chain whose total length is held fixed and for the chain at zero tension. The fixed chain's middle is compressed by an amount that goes as one over its length; the free chain's is not compressed at all. The exponents differ by at most 0.0009 — the constraint was never in them.
Fig. 3 The tail exponent of the two-ended fit from bond six, at ten stiffnesses, for the fixed chain and the free one.

The tails were fitted exactly as before: A·[f(b) + f(N − 1 − b)] with f = b^(−p)·e^(−b/λ), one tail from each end, least squares on the logarithm, from bond 6, 10, 20 or 30 to the middle. Against the free bulk, the free chain’s exponents are the fixed chain’s.

From bond six they agree to under a thousandth at every stiffness — 0.4317 against 0.4314 at K = 1.1, 0.5088 against 0.5086 at 1.6, 0.6493 against 0.6484 at 2.5, 0.7262 against 0.7260 at 3.1. From any of the four starting bonds the largest difference is under three thousandths. The decay lengths agree to under a tenth of a bond.

Every stiffness, with the length fixed and with it free. For each stiffness: the fixed chain's uniform compression, the free chain's middle shift, the end bond's alternation in both, and the exponent from bond 6 in both. The compression is gone and nothing else has moved.
Fig. 4 Every stiffness: the fixed chain’s compression, the free chain’s middle shift, the end bond in both, and the exponent from bond six in both.

The tension is a change of stiffness

There is a reason the constraint could not have reached the tails, and it can be stated exactly. In the fixed chain every hopping is 1 + c plus its alternation. A uniform rescaling of all the hoppings in a Hückel chain rescales its energies and leaves its wavefunctions alone, so the bond orders — and through them the alternation — depend only on the alternation measured relative to the compressed hopping, a/(1 + c). Write the relaxation rule in that variable and the stiffness that appears is K(1 + c). The compression is not a new effect on the healing. It is the same chain at a stiffness lower by K·|c|: by 9 × 10⁻⁴ at K = 1.6, by 8 × 10⁻⁴ at K = 3.1.

That predicts a direction as well as a size. The exponents rise with stiffness, so a chain that is effectively a little softer should report a slightly smaller exponent. At all ten stiffnesses it does: the fixed chain’s exponent from bond six sits below the free chain’s every time, by between one and nine ten-thousandths. The slope of the exponent against stiffness near K = 1.6 is about 0.17, and 0.17 times 9 × 10⁻⁴ is 1.6 × 10⁻⁴ — the observed difference there is 2 × 10⁻⁴. On the stiffer chains the observed differences run a few times larger than the slope predicts, which is within the scatter that the fits’ sensitivity to their windows has already shown, and the sign never fails.

So the answer to the question the compressed bulk could not ask is that the constraint was never in the exponents. The tension that the fixed length puts on every bond moves the middle by a thousandth and the tails by nothing that a fit can see. The healing — how the ends’ extra alternation dies away into the bulk — is a property of the ends and the band, and it is the same whether or not the chain is allowed to change its length while it heals.

Nor was it in anything the earlier readings of the healing rest on. Every decay length, enhancement and fit window in the series was taken from fixed chains — including the check that discarding the first few bonds hides no second exponent — and a constraint equivalent to a change of stiffness under a thousandth shifts those by less than their last quoted figure. The instability itself — a chain cannot stay even at half filling — is a property of the bulk, and the free bulk and the compressed one differ only in where the zero of bond length is put.

That is worth having for its own sake, because the rising exponents the series has carried — from 0.43 at the softest stiffness to 0.73 at the stiffest — now stand on two independent constructions of the bulk rather than one. Neither the ring nor the compression nor the constraint is the cause of the rise.

The drift that was supposed to be a correction

The exponents do have a habit that survived the repair of the reference. On the middling and stiff chains, starting the fit deeper lowers the exponent. At K = 2.2 it falls from 0.601 from bond 6 to 0.560 from bond 30; at K = 2.5 from 0.649 to 0.607. The window that was not a plateau met the same habit in a different reading of the same profiles.

The obvious explanation is that the tail form is the leading term of an asymptotic expansion and the drift is the next term. A pure b^(−p)·e^(−b/λ) fitted to a profile with a correction factor (1 + a/b) will report a p that depends on where it starts, because near the end the correction shifts the apparent power and far out it does not. Fit the correction, and p should stop moving.

It does not.

Adding the correction term makes the exponent wander further, not less. The fitted tail exponent at stiffness 2.8 against the bond the fit starts from, with and without a 1/b correction to the tail. Without it the exponent moves by 0.025 between bond 6 and bond 30; with it, by 0.146. If the drift were the next term of the tail's expansion, fitting that term would have taken it out.
Fig. 5 The tail exponent at K = 2.8 against the first bond of the fit, with and without a 1/b correction. The corrected exponent falls further, not less.

At K = 2.8 the plain fit’s exponent moves from 0.697 to 0.673 between bond 6 and bond 30. The corrected fit’s moves from 0.692 to 0.546 — six times as far. The fitted coefficient a grows from 0.08 to 4.9 over the same range, which is the correction doing what a free parameter does: taking up whatever the data in the window want, rather than describing something fixed about the profile.

The correction narrows the drift only where there was little to narrow. How far the fitted exponent moves as the first bond in the fit goes from 6 to 30, at each stiffness from 1.6, without and with a 1/b correction. Around a stiffness of two the two are equal; on either side the corrected fit's exponent moves further — by about three times on the stiffest chains, where the drift was the question.
Fig. 6 The spread of the exponent across fit starts 6 to 30, at each stiffness from 1.6, with and without the correction.

The pattern holds wherever the drift was the question. From K = 2.2 to 3.1 the spread of p over the four fit starts grows when the correction is added: 0.041 to 0.053, 0.042 to 0.114, 0.025 to 0.146, and 0.008 to 0.118 at the stiffest. Only near K = 1.8 to 2.0, where the plain drift was smallest, does the correction leave it the same or trim it slightly. The free and fixed chains behave identically here too, to a few thousandths in every spread.

Why a correction cannot be told from a power

With a free correction, a wrong exponent costs a third as much. The fit's root-mean-square error in the logarithm when the exponent is held at each value and everything else refitted, at stiffness 2.5 from bond 10. Without a correction the cost has a minimum at p = 0.644 and rises steeply on either side. With one, the minimum moves to 0.571 and the valley is about three times shallower: the correction's coefficient slides from 6.3 to -0.9 along it, absorbing most of any change in the power.
Fig. 7 The fit error with the exponent held at each value and everything else refitted, at K = 2.5 from bond 10. With the correction free the valley is about three times shallower, and the coefficient slides along it.

The reason is in the shape of the fit’s cost. Hold p at a value, refit everything else, and record the error. Without a correction, the cost at K = 2.5 from bond 10 has a minimum at p = 0.644 and at p = 0.445 it is ten times that minimum. With the correction free, the minimum moves to 0.571 and the error at 0.445 is only 3.4 times it. Along the valley the correction’s coefficient slides from 6.3 at p = 0.40 to −0.9 at p = 0.70.

Over a window of 150 bonds, b^(−p) and b^(−p′)·(1 + a/b) differ by a slowly varying factor that the exponential’s own length and the amplitude can absorb almost entirely. A power and a 1/b correction are nearly the same function on the range a half chain of 160 bonds offers. Fitting both does not separate them; it lets the data trade one against the other, and where the trade lands depends on the window.

It is tempting to read something into where the corrected fits go when the window is deep. From bond 30, on the chains from K = 1.8 to 2.5, the corrected exponent is 0.495, 0.503, 0.500 and 0.497 — one half, near enough, on four chains. But at K = 2.8 it passes through one half and keeps falling — 0.514 from bond 40, 0.490 from 50, 0.448 from 80, 0.431 from 100 — and at K = 2.0 it climbs back above 0.54 once the fit starts beyond bond 50. A value the fit passes through on its way somewhere else is not a limit, and the ridge says why the fit is free to pass through it.

What a chain with free ends does not settle

The free chain is free in one sense: its total length. Its ends are still the ends of a Hückel chain with the same hopping everywhere and no end-group chemistry; a real polyene’s terminal bonds differ from its interior ones for reasons this model does not contain, and those reasons would change the end’s excess, though nothing here suggests they would change how it decays.

The relaxation is still the linear one, a bond order mapped to a length through a single stiffness. A chain whose bonds stiffen as they shorten would heal differently near the end, where the bonds are most distorted, and the exponents are read starting six bonds from the end precisely to stay out of that region.

And the fit’s form is still a guess. Two forms were tested here — a power times an exponential, and the same with a 1/b factor — and the second was rejected as an explanation of the drift. That leaves the drift unexplained. It does not show that no correction describes it, only that the next term an expansion in 1/b would offer is not distinguishable from a change of power over the range available.

Who measured what

The Peierls instability of a half-filled chain is Peierls’s, from the 1930s, and the Hückel chain with a linear bond-order relaxation is the model of Longuet-Higgins and Salem for polyenes, 1959, and of Su, Schrieffer and Heeger in its continuum and soliton form, 1979. The comparison between the fixed-length and zero-tension rules, and the test of the 1/b correction against the exponents’ drift, are new here.

How the chains were relaxed and read

The free infinite chain was solved by iterating the relaxation rule over a Bloch sum of 8,192 points to obtain d0d_0 and P0P_0 at each of the ten stiffnesses. The open chain of 320 sites was then relaxed with P0P_0 in place of the chain’s mean, by the same linear mixing at three tenths and the same convergence criterion of 10⁻¹² a bond as the fixed chain.

The excess over bulk was the smoothed envelope of |δ| minus d0d_0, with points below the floor of 10⁻⁸ excluded. Both tail forms were fitted by Levenberg–Marquardt on the logarithm, the corrected form started from the plain fit’s solution with a = 0. The ridge held p on a grid of 21 values from 0.40 to 0.70 and refitted the amplitude, the length and the coefficient at each.

What had to hold, and could have failed: the free bulk’s P0P_0 had to return d0d_0 under the rule. Every free chain had to converge. The free middles had to be the free bulk to 10⁻¹⁰ wherever the stiffness was 2.0 or less. Free and fixed exponents had to agree to 0.005 from every starting bond, and the end alternation to 5 × 10⁻⁴. On every chain from K = 2.2 the correction had to widen the drift rather than narrow it. At K = 2.5 the cost of a wrong exponent had to fall by more than half once the correction was free, with the coefficient sliding by more than five along the valley.

Still open: a window long enough to separate the two

The ridge is a statement about 160 bonds. A longer chain gives a longer window, and a power and a 1/b correction that are indistinguishable over 150 bonds may separate over 500. A ring is not the bulk estimated the length at which two tails at the middle fall to the floor — 711 sites at K = 2.8 and 1,102 at 3.1 — and a free chain of that length would be the natural place to fit both forms again and ask whether the corrected exponent stops moving.

The other question is what the drift is, now that the obvious answer has been taken away. The plain fit’s exponent falls with fit start on every chain from K = 1.6 upward and most steeply on the middling ones. Measured in decay lengths rather than in bonds, the fit windows on the stiff chains cover a few λ and those on the soft chains a dozen, so a drift that depends on how many decay lengths a window spans would look exactly like this — and the rule of thumb that was on the flat part is a reminder that where a window sits on a curve can matter more than how wide it is.

Shares its objects with

Essays naming at least two of the same things, that neither author linked.

Named objects

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Bond alternationFinite-size effectLeast-squaresModel limitPeierls distortionRelaxationThermodynamic limit