Molecular Geometry & Bonding
what the shape decides
Concept

Thermodynamic limit — where it appears

The limit of infinite size at fixed density, where quantities per site settle down. Whether a gap survives that limit is what distinguishes an insulator from a molecule with a large gap.

Named by 24 essays across 5 fields — each of them below, with the objects they name alongside it.

Chains of 2, 4, 8, 16, 40: the levels crowd, the edges do not move. Every level of a chain of 2, 4, 8, 16, 40 sites, drawn at its computed energy on one axis. Adding sites adds levels inside a fixed interval rather than widening it, which is what makes the large system a band rather than a wider molecule.

A solid is a molecule that did not stop

Diagonalise a chain of two atoms, then four, then forty. Nothing new happens at any point, and by forty the levels are a band. The passage from molecule to solid is not a change of subject; it is the same matrix at a different size, and every step of it can be watched.

solids · Bands in a solid How long a chain has to be before its ends stop mattering. The difference in energy per site between a ring and a chain of the same length, against that length. It falls as one over the length, which is what it means for the difference to be an end effect, and the size at which it drops below a thousandth of a β is printed.

Where a molecule stops being one

There is no size at which a molecule becomes a solid, and the useful question is a different one — how large must it be before a given property has stopped changing? The answers differ by a factor of several hundred between one property and the next, and every one of them is a measurement.

solids · Bands in a solid A ring of 60: binding against filling. The occupied-level sum per site of a ring of 60, swept from an empty band to a full one. It rises to a maximum at half filling, falls symmetrically, and reaches exactly zero when every level is occupied. The thin curve is the closed form the finite sum approaches, and the second trace is the same sweep for the structure with ends.

Half filled is as bonded as it gets

Sweep a band from empty to full and the binding it supplies rises to a maximum at half filling and returns to exactly zero when every level is occupied. A completely filled band holds a solid together no more than a filled shell holds two helium atoms together, and for the same reason.

solids · Bands in a solid How many sites a state occupies, and whether that depends on the ring. The participation ratio of the states at the middle of the band — the number of sites a state occupies — against the width of the disorder, for rings of 50, 100, 200 sites. With no disorder the three curves are three different numbers, each two thirds of its own ring. At the right they have converged: 7.47 sites on a ring of 50 and 9.82 on a ring 4 times larger.

The third way to be an insulator

A ring of two hundred sites with a half-filled band has its levels crowding together as 1/n, which is the usual electronic-structure criterion for a metal, and it goes on holding at every disorder tested. Meanwhile the states at the middle of the band go from occupying 127 sites to occupying 10 — and at that disorder the number stops depending on how large the ring is at all.

wrong · Metal The same neighbours, and a fifth of the binding between them. five structures in which every site has 4 neighbours. Their second moments are identical — 4 for every one, which is the coordination and is what the band width is read from. Their bindings per site are not: they run from 1.28 to 1.64, and the least bound is the one with the most four-step walks.

Two structures with the same neighbours

Five structures in which every atom has exactly four neighbours. Their second moments are 4.000 to nine decimal places, because that identity is the coordination and nothing else. Their bindings per site run from 1.2756 to 1.6363 — a spread of twenty-two per cent — and two of them that agree on the second, third and fourth moments together still differ in the third decimal place.

solids · Cohesion A band becomes a bell curve, and the dimension is the sample size. The normalised fourth moment of a wrapped hypercubic structure's density of states against its dimension, with the closed form 3 − 3/2d drawn through it. They agree to eight decimal places at every dimension from one to 6, and the reason is a limit theorem: a hypercubic spectrum is the sum of d independent one-dimensional ones, so its cumulants fall as powers of d exactly as a sum of independent samples does. The Gaussian value of three is approached and never reached.

A band becomes a bell curve

The normalised fourth moment of a hypercubic structure's density of states is 3 − 3/2d exactly, from one dimension to six, to eight decimal places — because the spectrum is a sum of d independent one-dimensional ones and the central limit theorem is what it is obeying. Reach further in one dimension instead and the shape overshoots a Gaussian rather than approaching it: a chain touching its third neighbour has a cubic structure's coordination and a fourth moment of 3.389 against 2.500.

solids · Bands in a solid How many times more a metal carries, and when. The ratio of the carriers in a uniform ring to those in an alternating one of the same size, at four sizes and six temperatures. Down the left-hand column the two are indistinguishable, because a ring of 42 at kT = 0.002 has a level spacing larger than the temperature and is no more a metal than the gapped one is. Along the bottom row they are indistinguishable again, because the temperature is larger than the gap. The word only means anything in the middle.

The metal a thermometer cannot find

A metal is a system with excitations of arbitrarily small energy, which is a claim about a sequence of finite systems rather than about any one of them. Put a temperature on it and the claim needs a second limit, and the two do not commute: a uniform ring of forty-two at kT = 0.002 carries exactly as much as an alternating one, and at kT = 0.1 a ring of three hundred and twenty-two carries only four times as much.

wrong · Metal How anisotropic a structure has to be. The fourth moment of a layered band, divided by the square of its second so that the width drops out, against the coupling between layers. The curve is the closed form that follows from adding cumulants — 3 − 3(2 + λ⁴)/(2(2 + λ²)²) — with nothing fitted; the points are eigenvalues. At λ = 1 it is the three-dimensional value 2.5 and at λ = 0 the two-dimensional 2.25, and it is halfway between them at λ = 0.47 — so the question of when a band is effectively two-dimensional has a number rather than an opinion.

Two bands, and the shape of each

A band's shape has a closed form when the structure it belongs to factorises. Put a second band beside it and the form survives exactly while the two do not talk, and fails as the square of the coupling once they do. Make one direction weaker instead and the form survives everywhere — 3 − 3(2 + λ⁴)/(2(2 + λ²)²), agreeing with eigenvalues to nine decimal places — so how anisotropic a structure has to be before its band is two-dimensional is a number: λ = 0.46518.

solids · Bands in a solid A mixture is not the average of its ends. The binding per site of a square net whose sites are of two kinds, against how many of each. The straight line is arithmetic rather than a fit: a structure of one kind only has every level shifted by ±δ, so the two ends and the line between them are known before anything is diagonalised. Every mixture lies above it — more bound — by as much as 0.43 per site at the middle, and that departure is the whole of what makes an ordered compound worth forming.

A mixture is not the average of its ends

Half of a structure's sites raised and half lowered, and the line between the two pure ends is arithmetic — no diagonalisation needed. Every mixture lies below it, by 0.42987 per site for the ordered arrangement and 0.23690 for the segregated one at the same composition, so composition fixes neither the binding nor the gap. And the departure is not quadratic in the contrast: it grows as its 1.79 power in a chain and its 1.28 power on a square net.

solids · Cohesion The whole difference lives at the two ends. The energy difference between the two dimerisations of an open chain, held at the same distortion, multiplied by the number of sites. It settles on a constant — 1.09 in units of the hopping — so the difference per site falls as one over the length, with a fitted exponent of -1. An end is a bond that is not there, and it is worth the same amount whatever it is attached to.

The distortion the ends decide

A chain of an even number of sites has an odd number of bonds, so its two dimerisations are different molecules rather than one molecule translated. Held at the same distortion they differ by 1.08715 in units of the hopping, whatever the length — a fixed amount of energy living at the two ends, with the per-site difference falling as one over the length at a fitted exponent of −0.99986. And below a hundred and twenty-eight sites the second dimerisation does not exist at all.

applied · Peierls distortion The ceiling rises and the measurements fall, so they cross. The largest acceleration the rotamer account can produce, against the ring being closed, with the measured gem-dimethyl accelerations on the same axis. Closing a bigger ring means freezing more rotations, so the ceiling rises steeply; the measurements go the other way. The five-membered ring's 250-fold acceleration is above its own ceiling of 36.5 and the six-membered ring's tenfold one is far below its 121 — so the account is refused at one size and sufficient at the next.

A ceiling that rises where the measurements fall

The rotamer account of the gem-dimethyl effect has a largest possible acceleration, which looks like a limitation. It is a prediction: the ceiling is a closed form in the number of rotations a closure freezes, it rises steeply with ring size, and the measurements fall — so the account is refuted for the five-membered ring and more than sufficient for the six.

shape · Strain Where the two halves of an alloy come apart. The gap at the centre of a binary alloy's band against the contrast between its two components, for a chain of 2048 sites arranged three ways. The ordered arrangement's gap is exactly twice the contrast and opens at once; the segregated one's is exactly the contrast less the band width and opens at 2; and the random one, which has no closed form, opens a little before the segregated one and stays a little wider. Below the openings the curves sit at one level spacing rather than at zero, which is what a finite chain has instead of a gap.

Two bands, if the chain is short enough

Take a chain, raise half its sites and lower the other half, and ask when the band comes apart into two. The ordered arrangement splits at once, the segregated one at a contrast equal to the band width, and the random one splits earlier than either — and then closes again as the chain is made longer, because a long chain contains a long run of like atoms and a long run is a narrow sub-band.

solids · Defect How far the rotor count would have to be wrong. The ceiling against the number of rotations a closure freezes, with the two measured accelerations drawn across it. The five-membered closure freezes three and its ceiling is 36.46; the ceiling does not reach the measured 250 until 5 rotors, so the count would have to be wrong by 2 on a ring that has three rotations to freeze. The six-membered closure freezes four at a ceiling of 120.88, and stays above its measured 10 down to 2 — so the refusal is airtight and the sufficiency is comfortable.

An estimate that can be wrong by two

The ceiling on the gem-dimethyl effect is exponential in the number of rotations a closure freezes, and that number was taken as n − 2 without counting — which left the refutation at five rings probable rather than airtight. It is airtight. The ceiling does not reach the measured 250 until five rotors, on a ring that has three, and no hindering of the tether can raise it.

shape · Strain The carriers a distortion was hiding. A half-filled ring of 40 — one of the 4m rings that carry exactly one pair of carriers at every temperature — allowed to distort. Cold, it alternates by 0.1232, opens a gap of 0.4927 and carries 3.6e-15 carriers rather than one pair. The alternation is undone continuously at kT = 0.1358, and the carrier count comes back as it goes.

The carriers a distortion was hiding

A half-filled ring of 4m carries exactly one pair of thermal carriers at every temperature, which is true only of a ring held rigid. Allowed to move, it does not carry them: it alternates, opens a gap of 0.4927, and carries none at all until a temperature that undoes the distortion.

wrong · Metal The chain distorts hardest where it stops. The alternation of each bond along a relaxed chain of 64, at four elastic constants, with the bulk value of each drawn as a dashed line. Every chain alternates more at its end than in its middle — by 1.21 times at the stiffest and 3.15 at the softest — and the excess dies away over a handful of bonds. The uniform alternation usually assumed is the flat part of these curves.

The chain distorts hardest where it stops

Holding the alternation uniform is what made the end energy a clean constant, and it is the one assumption the end-energy calculation had to make. Letting every bond find its own value shows the distortion is largest at the end and decays inwards over a measurable length — one and a half bonds in a strongly dimerised chain, five in a weak one.

solids · Peierls distortion The slope goes to a half, and a window fit stops short of it. The local slope of the alternation against the reduced temperature, between each neighbouring pair of points, on a ring of 40 at K = 1.6. It rises monotonically from 0.4115 to 0.5053 as the transition is approached, crossing a half at about a part in a thousand of the reduced temperature. The fitted 0.44 is the average of the left-hand end of this curve; the exponent is one half, which is what a free energy analytic in one order parameter is obliged to give.

The exponent was the window's

A fit over the last decade before a distortion vanishes gives an exponent of 0.44, and running it on larger rings should say whether the number belongs to the transition or to a forty-site ring. It belongs to neither. The local slope runs to 0.5020 as the transition is approached, and 0.44 is what a fit over that particular decade returns — on every ring size and every stiffness, because the whole curve is one curve.

wrong · Metal A state in the gap is a particle in a box the alloy happened to make. The participation ratio of the 40 levels nearest the gap centre, over 5 chains of 400 sites, against the length of the run of like sites each one sits on. The line is 2(L+1)/3, the participation ratio of the ground state of an isolated chain of L sites, with nothing fitted. 38 of 40 lie on it to within 3.1 per cent. The ones above it are states shared between two runs close enough to talk, which is a defect band beginning.

A particle in a box the alloy made

A random alloy's gap is set by the longest run of like sites. What sits at the edge of that gap turns out to be the simplest state in quantum mechanics: a particle in a box of L sites, occupying 2(L+1)/3 of them, to within three per cent and with nothing fitted — except for the two states in forty that found a second run to share.

solids · Defect A length that keeps growing, and one that stops. The fitted decay length of the ring-current response, against the number of rings. The bare acene's runs 1.397, 1.669, 1.896, 2.104, 2.302 — up by a factor of 1.65 and still climbing — while its own gap falls from 0.590 to 0.1102. With a gap held open the same measurement gives 0.678, 0.642, 0.636, 0.636, 0.639, which has stopped moving by the third molecule. There is a magnetic reach, and an acene is too nearly gapless to have one.

A reach that has no length

A ring current's response to a neighbouring ring falls with distance, which invites asking for the length. Every acene computed gives a longer one — 1.397, 1.669, 1.896, 2.104, 2.302 rings — because the gap that would set the length is closing at the same time. Give the same molecule a gap that stays open and the number settles at 0.636 by the third one and does not move.

symmetry · Aromaticity Two lengths off the same chains, and only one of them has an exponent. The length an end's influence reaches into a chain of 320, against the gap the bulk has opened, over ten elastic constants and a factor of twenty in the gap. Fitted over the first twelve bonds — as a short-window fit does — the exponent is -0.476. Taken from the local decay rate extrapolated to a bond infinitely far from the end, it is -1.029, and every neighbouring pair of points gives between -1.06 and -0.91. The argument says −1. The two lines are the same ten profiles read two ways.

A decay that keeps slowing down

A healing length fitted over the first twelve bonds of each relaxed chain goes as the gap to the power −0.60, against an argument that says −1. A fitted exponent can belong to its window, and this one does — but not because the window is too short for the chain. The profile is not an exponential at all, so there is no single length for an exponent to be of.

solids · Peierls distortion Where the coupling overtakes the spacing. Two quantities that both depend on the chain length, for runs of 6. The coupling is the splitting of the closest pair of runs, which rises as the chain grows because a longer chain brings some pair closer together. The spacing is the mean separation of the gap levels in energy, which falls as the chain grows because there are more of them. They cross at 8,675 sites, and a set of levels coupled more strongly than they are spaced is a band.

The length at which levels become a band

Two runs of low sites share a state when they are close enough, and the splitting falls exponentially over two sites. A longer chain brings some pair closer while spreading its levels thinner, so the two quantities run against each other and cross — at about a thousand sites for runs of four and eighty thousand for runs of eight. Chains of four hundred sites are far below that, which is why every gap state on them is a box.

solids · Defect The alternation a spring buys, three ways. The alternation against the elastic constant, on a logarithmic axis. The middle line solves (2/π)(K − E)/(1 − δ²) = K for the complete elliptic integrals; the lower one is the exponential form every account of a Peierls distortion quotes, which is its own asymptote and is 6.5 per cent low at K = 1.2; the upper one is a ring of 40, which leaves the infinite chain as the spring stiffens because a smaller alternation is a longer coherence length.

The amplitude the collapse left behind

Five Peierls curves became one curve when each was divided by the alternation its ring settles at cold, so that amplitude is the whole of what distinguished them — and it was five golden-section searches over diagonalisations with no formula anywhere. It has one, exactly, as a sum of square roots; and writing it down says that one of the five rings was never measuring a long chain.

wrong · Metal The coupling at the closest pair, and at the typical one. For runs of four to eight low sites at half concentration: the splitting between two runs one site apart, which is the largest coupling any chain can produce, and the splitting at the separation two runs typically have. Both on a logarithmic axis spanning 173 decades. A band width taken from the second is not a small number; it is not a number.

A band that is a hundred and seventy decades of nothing

The chain length at which a defect's levels become a band can be located by asking when the coupling between the closest pair exceeds the level spacing. A band also has a width, and a width is set by the typical coupling rather than the closest one. For runs of eight at half concentration those two numbers differ by a hundred and seventy-three orders of magnitude.

solids · Defect The count, for five run lengths. The fraction of runs whose nearest neighbour of the same length is coupled more strongly than a threshold, against how many decades below the closest possible coupling that threshold sits. Every curve is a straight line over this range, because the fraction is small and the geometric tail is linear in the separation there. The slope is what the next figure is about: it is the whole content of the distribution, and it is a product of two numbers.

A count rather than an average

Two couplings quoted from one distribution sit a hundred and seventy decades apart. Neither is a summary of it. The quantity that decides how much of a spectrum near a box level is resonant pairs is a count of pairs above a threshold — and it has a closed form, which is a density times a reach times the logarithm of ten.

solids · Defect The resonant share is not a straight line; it bends over and saturates. The share of runs of six in a resonant pair against the logarithm of the chain length, from a thousand sites to 10⁵⁰, at five concentrations of low sites. Dashed lines carry the slope from 10³ to 10¹² straight on. At x = 0.5 the share is 16.1 per cent at 10¹² and 57.7 per cent at 10⁵⁰, where the straight line would be at 78.6. At x = 0.75, the concentration with the most runs of six, it passes 76 per cent by 10³⁰.

The share that was read as a line

The share of defect runs sitting in a resonant pair was read as a straight line in the logarithm of the chain length, rising by a density times a reach per decade and never saturating. The exact rise is that amount times the share of runs not yet resonant. At the concentration first studied the difference is small over nine decades and large beyond them; swept to the concentration with the most runs, the rise falls to a third, and half of all runs are resonant ten orders of magnitude later than the straight line says.

solids · Defect

Named alongside it

The objects these essays reach for when they reach for this one.

Model limitTight-binding modelsBand gapClosed formBands in a solidDensity of statesEnergy per siteDefect stateLevel spacingBand widthDisorderEigenvalue

All concepts