Molecular Geometry & Bonding
what the shape decides
The collection

Every essay — page 35

Page 35 of 42, continuing through the fields in the same order.

Orbitals Where the atoms go Bonding models What symmetry decides Beyond the octet What a spectrum settles When the molecule does not stop What the shape is for What is taught wrongly Series Named objects Orbitals Refutations Search

What symmetry decides

A molecule's point group follows from its coordinates, and it settles whether the molecule can be polar or chiral with no reference to bonding.

One distortion, resolved into the species of the group it left. An arbitrary displacement of benzene, projected onto each symmetry species of D6h. The weights add to 1, which is the check that the projectors resolve the whole of it: the largest is E2g at 35.0 per cent, and the totally symmetric part — 3.4 per cent here — is the part that changes every distance and no symmetry at all.

How far, and along which coordinate

A continuous symmetry measure returns one number: how far a structure is from a shape. Projecting the same displacement onto the twelve symmetry species of benzene's group turns it into a list that sums to 1.000000000000, says which coordinates the structure left along, and shows that the totally symmetric part — 3.4 per cent of this one — moves every atom by 0.0200 ångström and lowers the symmetry measure by nothing at all.

8 figures Two kinds of answer to a flux, and only one of them is a curve. The π binding of three rings against the magnetic flux through them, in units of beta and of the flux quantum, measured from each ring's own value at zero flux. Beta is negative, so a binding that FALLS is an energy that rises: benzene's does, which is what a diamagnetic ring current is. Cyclobutadiene's rises in both directions from a corner — its energy has no second derivative at zero field at all, and the two one-sided slopes differ by 12.57.

Two rules that share no arithmetic

Hückel's rule is a statement about a gap. Put a magnetic flux through the same rings instead and ask which of them push the field out, and the answer is the same set — eighty cases, no exceptions — although the second calculation counts nothing and has no shells in it. And the rings the rule excludes turn out to have no magnetic susceptibility at all: their energy has a corner at zero field.

9 figures How many coordinates, and how many motions. For each of six molecules, one square per internal coordinate the valence set carries — bond stretches, angle bends and an out-of-plane wag where there is one — with a rule drawn at the number of vibrational degrees of freedom. three of them have more coordinates than motions, and which ones is decided by shape rather than by size: ammonia's three angles are independent and boron trifluoride's are not, and the only difference is that one is flat.

More coordinates than motions

Methane has ten internal coordinates and nine ways to vibrate, boron trifluoride seven and six, formaldehyde seven and six. The excess is not bookkeeping: it is a combination of coordinates that describes no displacement of any atom, and adding twenty-five units of force constant along it moves every frequency by five parts in a hundred million.

8 figures Three quarters, exactly, for every mode that is not totally symmetric. The depolarisation ratio of every Raman-active mode of five molecules, computed from a bond-polarisability model. 18 of the 26 sit on three quarters to better than a millionth, and they are exactly the modes that are not totally symmetric: the mean polarisability derivative is a trace, a trace is invariant, and an invariant has no derivative along any other species. The polarised ones below the line are the totally symmetric modes, and where they sit is a property of the model rather than of the group.

The one intensity symmetry does fix

Symmetry says which bands exist and declines to say how strong they are. It makes exactly one exception, and it is a ratio: every Raman band that is not totally symmetric is depolarised by exactly three quarters, whatever the molecule and whatever the model — and methane's symmetric stretch is polarised by exactly zero, because its group is cubic.

8 figures The shallowest slope, and the steepest. For three molecules, the softest and stiffest vibrations, the species each belongs to, and what a unit distortion along each costs. The cost is not taken from the frequency: it is computed by resolving the distortion onto the normal coordinates in the mass-weighted metric and adding up ω²q². That it comes back as the frequency is the identity the whole comparison rests on — the species decomposition uses only the coordinates and the group, and the cost uses only the masses and the force constants, and the two have to agree on this case before they can be asked to disagree on any other.

The coordinate it was already soft along

A distorted structure can be resolved into the symmetry species of its ideal group, and that resolution cannot say which coordinate a molecule fell down by itself and which one something outside pushed it along. The force field answers that, and the two halves agree on the case where they must — a unit distortion along a normal mode costs exactly that mode's frequency, to a part in a million, computed from masses and force constants by one side and from coordinates and characters by the other.

5 figures The current does not divide equally between equal rings. The current each ring of an acene carries under a uniform field, ring by ring, for four acenes. Naphthalene's two rings are equal by symmetry; anthracene's middle ring carries 1.180 times what its outer ones do, and tetracene's inner rings 1.222 times. Every ring has the same area and the same six carbons, and the response is a matrix rather than a set of parallel loops.

The current does not divide

A fused ring system's response was computed from the areas of its rings, and the obvious next question was whether the current divides between them the way it divides between two resistors. Giving each ring its own flux and taking the second derivatives says no: the response is a matrix, its off-diagonal entries are nearly half its diagonal ones, and anthracene's middle ring carries 1.18 times what its outer rings do.

7 figures How nearly a broken symmetry survives. A screened potential splits the n = 2 shell and destroys the degeneracy the linear Stark effect depends on. The field needed to overcome the splitting and restore the linear behaviour runs from 4.3e+4 volts a centimetre at a quantum defect of 0.00040 to 2.9e+7 at a defect of 0.208. The dipole between the states is 3.000 throughout, so the field is exactly the splitting divided by twice it.

How nearly a broken symmetry survives

The hydrogen shell's extra symmetry is what makes its Stark effect linear, and a real atom does not have it. Screening splits the shell, and the field needed to overcome the splitting and restore the linear behaviour is a curve — from forty thousand volts a centimetre at a quantum defect of 0.0004 to thirty million at a defect of 0.21.

7 figures 10 of 55 force constants that no spectrum can see. The map from methane's 55 independent force constants to its Cartesian Hessian, as a spectrum: 45 directions the frequencies respond to and 10 they do not, out of 55. The null block is exactly the size the redundancy count predicts — 10 for 1 redundancy on 10 coordinates — and the two are computed by different routes, one a rank and one a closed form. A force field quoted to four figures is quoted along 45 directions that were measured and 10 that were chosen.

Ten directions no frequency can see

A redundant force field has one obvious flat direction. There are ten: methane has fifty-five independent force constants and a ten-dimensional subspace of them that no spectrum can touch. The literature's repair is to project — and the metric a vibrational analysis is naturally written in cannot define the projection at all, because a redundancy is a null vector of it.

8 figures A species label is ambiguous for every one of 17. For each molecule, the share of its vibrations belonging to a symmetry species that appears more than once — the distortions a species label cannot price, because the label picks a space rather than a mode. Every molecule in the census has at least one such species, the share averages 71.4 per cent, and for 9 of 17 the repetition is not forced by the group's capacity — those molecules have fewer vibrations than their group could hold without repeating, and repeat anyway.

A label that prices nothing

Pricing a distortion by its symmetry species works when the species appears once. It appears more than once for every one of seventeen molecules — 71.4 per cent of their vibrations on average belong to a species that is not unique — and for nine of the seventeen nothing forces it: their groups have room to spare and they repeat anyway.

5 figures A length that keeps growing, and one that stops. The fitted decay length of the ring-current response, against the number of rings. The bare acene's runs 1.397, 1.669, 1.896, 2.104, 2.302 — up by a factor of 1.65 and still climbing — while its own gap falls from 0.590 to 0.1102. With a gap held open the same measurement gives 0.678, 0.642, 0.636, 0.636, 0.639, which has stopped moving by the third molecule. There is a magnetic reach, and an acene is too nearly gapless to have one.

A reach that has no length

A ring current's response to a neighbouring ring falls with distance, which invites asking for the length. Every acene computed gives a longer one — 1.397, 1.669, 1.896, 2.104, 2.302 rings — because the gap that would set the length is closing at the same time. Give the same molecule a gap that stays open and the number settles at 0.636 by the third one and does not move.

6 figures Where the explanation gives a negative number of vibrations. The usual formula against the answer, for the 15 molecules with internal coordinates here. It is right for 7 of them and wrong for 8, and for sulfur hexafluoride, benzene and both ferrocenes it predicts a negative number of totally symmetric vibrations — which is the clearest possible sign that the quantity being subtracted is not the one that should be.

A formula that predicts minus eleven vibrations

A molecule's count of totally symmetric vibrations is often explained as one per orbit of internal coordinates, less one per redundancy, with methane as the worked example. Computed for fifteen molecules it is right for seven and wrong for eight — and for sulfur hexafluoride, benzene and both ferrocenes it returns a negative number. Two independent corrections turn it into an identity.

7 figures Two events, not one — and both below the n = 2 shell's. The field at which each coupled pair's shift stops being quadratic and starts being linear, for the n = 3 shell and for the n = 2 shell. The n = 3 shell has two, a factor of 3.66 apart, and both are far below n = 2's single one — so the linear effect returns is two events in a shell with a d, and it happens at a field thirty times weaker than in a shell without one.

Two events where there was one

A broken symmetry returns at a field where the coupling matches the gap it has to overcome, and in a shell with two levels that field is a single number. The next shell up has three, two gaps and two dipoles — so there are two crossovers, a factor of 3.66 apart, both of them below the single one of the shell below, and the exponent takes more than a decade of field to travel between them.

6 figures