Molecular Geometry & Bonding
what the shape decides
The collection

Every essay — page 25

Page 25 of 36, continuing through the fields in the same order.

Orbitals Where the atoms go Bonding models What symmetry decides Beyond the octet What a spectrum settles When the molecule does not stop What the shape is for What is taught wrongly Series Named objects Orbitals Refutations Search

What a spectrum settles

A spectrum is a list of positions, and how many there can be is decided by the shape before any of them is measured. Counting them, and reading a structure back out.

H₂O and its D isotopologue. Every frequency of H₂O joined to the frequency the same force field gives when every H is replaced by D, with the ratio on each join. The force constants were not refitted and could not be: they do not depend on mass. The product of all the ratios is fixed by the masses and the moments of inertia alone, and is checked against that identity while this figure is drawn.

The isotope shift is arithmetic

Replace hydrogen with deuterium and every frequency drops. The usual rule says by a factor of the square root of two — and of water's three modes, not one of them does that. What is exact is a different identity, and the force constants cancel out of it.

8 figures ¹¹BF₃: what each mode is made of. ¹¹BF₃. Each row is one distinct frequency and each column one internal coordinate; the bar is the share of the motion in that coordinate. A mode whose largest share reaches nine tenths is a motion of one bond or one angle and is named for it. 1 of 4 here are.

Group frequencies, and where they stop

A carbonyl band sits near 1,700 wavenumbers in every ketone anybody looks at, and that regularity is real. Computed for a set of small molecules, four of twenty-one distinct frequencies belong to a single internal coordinate — and the four are exactly the coordinates symmetry leaves alone.

7 figures 6 molecules, counted. How many vibrations each molecule has, how many symmetry species they fall into, and how many frequencies are infrared active, Raman active, both, or neither. Every column after the first counts frequencies rather than modes, because a degenerate pair is one line in a spectrum. The molecules with a centre of inversion are the ones with nothing in the both column — mutual exclusion as a computed count. Nothing here uses a force constant.

How many frequencies, not how many modes

Benzene has thirty vibrations. It has twenty distinct frequencies, and of those, eleven can be seen — four in the infrared and seven in the Raman, with no band in common. The other nine are invisible to both experiments, exactly.

8 figures 4 molecules, counted. How many vibrations each molecule has, how many symmetry species they fall into, and how many frequencies are infrared active, Raman active, both, or neither. Every column after the first counts frequencies rather than modes, because a degenerate pair is one line in a spectrum. The molecules with a centre of inversion are the ones with nothing in the both column — mutual exclusion as a computed count. Nothing here uses a force constant.

Two structures, two spectra

A linear XY₂ gives two infrared bands, one Raman band and no band in common. A bent XY₂ gives three of each and three in common. Counting settles the shape, without a force constant, an assignment or a single measured frequency.

7 figures benzene: 30 vibrations. The vibrational representation, obtained by subtracting the translations and rotations from the full set of Cartesian displacements, with the infrared and Raman activity of each species read off the same character table.

What an absence proves

A band that symmetry forbids is not weak. Its intensity is zero, exactly, by a theorem — while a band that is merely too faint to see is absent for reasons no theorem covers. The two look identical in a spectrum and support completely different conclusions.

7 figures phosphorus pentafluoride: 3 environments. The atoms of phosphorus pentafluoride sorted into orbits under its own symmetry group — two atoms are in the same orbit when an operation of the group carries one onto the other, which makes them indistinguishable by any measurement. There are 2 of F, 1 of P, and a spectrum that resolves environments counts those rather than atoms.

A spectrum counts environments, not atoms

Phosphorus pentafluoride has five fluorines in two inequivalent sets, so its magnetic resonance spectrum should show two signals. It shows one — and the reason is not a symmetry the molecule has but a motion faster than the measurement.

8 figures carbonyl sulfide: a linear. The principal axes of carbonyl sulfide drawn at its centre of mass, with the moment of inertia about each. Which kind of top this makes it is decided by comparing three numbers, and the point group forces the same answer independently: an axis of order infinity means a linear molecule, with one moment at zero forbids an asymmetric top.

The rotational spectrum is a moment of inertia

Every line in a microwave spectrum sits at a multiple of one number, and that number is a conversion constant divided by a sum of mass times distance squared. No bonding argument appears anywhere in it.

8 figures A structure out of a spectrum. Two rotational constants and two bond lengths, three times over, from three pairs of carbonyl sulfide isotopologues. Above them, the same inversion run on moments computed from a known structure, which returns it to twelve figures. The measured pairs disagree with one another by 7.4 milliangstrom, which is the difference between a ground-state average and an equilibrium geometry.

A bond length out of a spectrum

A linear triatomic has two bond lengths and one moment of inertia, so one measurement cannot determine it. Substituting an isotope gives a second measurement on the same structure, and two equations in two unknowns have a solution — which comes out differently depending on which isotope is used.

8 figures Dipole selection rules in Oh. For every pair of symmetry species, whether an electric dipole transition between them is allowed and along which polarisation. An entry is allowed exactly when the triple product of representations contains the totally symmetric one.

Why a d–d band is weak

In a centrosymmetric complex the transition between the two halves of a split d shell is forbidden — exactly, by parity, with no small quantity anywhere. What makes it visible at all is that the molecule is never quite centrosymmetric, and the computation says which vibrations do the work.

5 figures methane, substituted 5 ways. CH₄, CH₃D, CH₂D₂, CHD₃, CD₄ — the same molecule with the same force constants, differing only in which nuclei are heavy. Every column is a consequence of which of the parent's operations survive the mass pattern: the surviving set is a subgroup, it is named from its own conjugacy classes, and the vibrations are reduced in it. The allowed and computed columns come from group theory and from the mass-weighted Hessian respectively, and they agree in every row.

A spectrum that changes when only a mass does

Methane has four distinct vibrational frequencies and two infrared bands. Replace two of its hydrogens with deuterium and it has nine and eight — with every force constant identical, every nucleus where it was, and the potential energy surface unchanged.

7 figures 7 molecules, three moments each. The principal moments of inertia of water, sulfur dioxide, formaldehyde, boron trifluoride, ammonia, methane, hydrogen peroxide, in u Ų, with the inertial defect and the asymmetry parameter beside them. The defect vanishes exactly for a planar structure and does not for any other, so three numbers computed from the coordinates decide planarity with no model anywhere in the argument. Every classification is checked against the one the molecule's point group forces.

The moment that is the sum of the other two

Three numbers computed from the coordinates and the masses decide whether a molecule is flat. For water, sulfur dioxide, formaldehyde, benzene and every other planar structure here the largest moment of inertia is the sum of the other two exactly; for ammonia it misses by 0.76 and for methane by 3.18.

7 figures ammonia: 3 valence bands. The measured valence photoelectron bands of ammonia, each labelled with the symmetry species of the orbital it comes from, and beside them the species the valence basis spans — the central atom's s and p functions and one s on each ligand, reduced in the molecule's own group. A band carrying a species the reduction does not produce would stop this figure being drawn.

Fewer bands than electrons

Methane has eight valence electrons and two photoelectron bands. Ammonia has eight and three; water has eight and four. The count is not of electrons, not of bonds and not of orbitals — it is of the symmetry species the occupied orbitals fall into, and it falls as the symmetry rises.

5 figures