The collection

Every essay — page 23

Page 23 of 42, continuing through the fields in the same order.

Orbitals Where the atoms go Bonding models What symmetry decides Beyond the octet What a spectrum settles When the molecule does not stop What the shape is for What is taught wrongly Series Named objects Orbitals Refutations Search

Where the atoms go

VSEPR as a repulsion minimisation rather than a table, the angles that fall out of it, and the case where five sites are not all alike.

Every prediction of the isotope ratio overshoots, and the mass decides nothing. The ratio of NH₃'s ground inversion splitting to ND₃'s, predicted six ways, against the measured 14.94. At the published barrier the usual mass gives 15.77 and the bond-conserving mass 17.79. With a quartic fitted to NH₃'s splitting they give 19.26 and 19.00; with a well whose shape is fitted to both of NH₃'s lines, 17.62 and 18.48. The bond-conserving mass is nearer the measurement in one of the three pairs and further in two, and the difference within any pair is smaller than the distance of either from the measurement.

Deuterium cannot tell the masses apart

A reduced mass built by holding ammonia's bonds rigid predicts a deuterated molecule differently from any constant mass, and ND₃'s splitting is measured. Run as a test, it cannot choose. Every well and every mass needs a barrier for ND₃ several per cent lower than for NH₃, every prediction of the isotope ratio from a well fitted to NH₃ overshoots by eighteen to twenty-nine per cent, and the two masses differ by less than either misses — in opposite directions in the two wells.

7 figures
The term two of the four molecules have and two do not. The radial coefficient of the bond-conserving reduced mass for the four isotopologues: the sum of the ligand masses, and what is left after the asymmetric correction. Three ligands at a hundred and twenty degrees on a circle whose radius changes as the apex descends move their own horizontal centre of mass outward — unless the three masses are equal. A frame that does not translate has to subtract that motion, and the amount is half the sum of the squared mass differences over the total mass. It is zero at both ends of the series and the same number in the middle.

The two that are not on the line

Ammonia and its fully deuterated twin are two points, and two points cannot show a curve. Putting the partly deuterated molecules between them needs a term neither symmetric one has — three ligands of unequal mass move their own centre of mass sideways as the apex descends — and it moves the prediction by half a per cent, which is what a whole change of mass construction was worth.

7 figures
The covariant operator is BenDaniel–Duke plus this. The difference between the Laplace–Beltrami operator — the one a one-dimensional manifold with metric μ(x) distinguishes, carried across to the flat measure by the unitary map ψ ↦ μ^(¼)ψ — and the BenDaniel–Duke ordering, divided by the function it was applied to, at forty-one positions inside the molecule's own range. The curve drawn through the marks is the two-function fit every ordering is a combination of, and it passes through them to a part in ten million.

The ordering a manifold picks

A position-dependent mass leaves the kinetic energy with no unique quantum form, and an earlier sweep of the five orderings in use found half a per cent between them. A one-dimensional reduction is a one-dimensional manifold, a manifold has a distinguished Laplacian, and carrying it to the flat measure lands on exactly one of those five — not the one with no extra potential, and not the one anybody reaches for.

6 figures
A long bond goes axial at five and equatorial at seven. The energy of the odd site placed axially minus placed equatorially, against the odd bond's length relative to the others, for the trigonal bipyramid and the pentagonal bipyramid. Above zero the equatorial site is preferred. At five a longer bond goes axial and a shorter one equatorial; at seven, from 0.7 to 1.3, every sign is reversed — a shorter bond axial, a longer one equatorial. An open marker is a placement that is not a minimum: at seven the site each bond avoids is one it would slide out of.

The long bond goes to the crowded site

Given one bond longer than the others, the repulsion model puts it axial in a trigonal bipyramid — against the rule it is usually cited for. The reason is a crowding count, and at seven sites the count reverses: the pentagonal bipyramid's crowded site is equatorial, so a long bond goes equatorial and a short one axial. PF₅'s long bonds are axial and IF₇'s are equatorial. And at seven the site a bond avoids is not even a minimum.

6 figures
Two pyramids, and only one of them has ever shown a line. What ammonia and phosphine each bring to the same one-dimensional model. The barrier is six times larger and the apex sits twice as far out, so the action under the barrier is seven times larger and the splitting is twenty-four orders of magnitude smaller. What is not six times anything is the transverse zero-point difference between a molecule and its deuterated twin: the modes that carry it are the ligands' own, the ligands are the same three hydrogens, and the two numbers are within thirty per cent of each other.

The same fraction at six times the barrier

Ammonia's two fitted barriers leave a gap that an isotope-dependent term would have to fill, and the term was sized at five per cent of the transverse zero-point difference. Phosphine can be asked the same question and cannot answer it the same way: its splitting is twenty-four orders of magnitude below anything the solver can represent, and the solver does not fail cleanly — it reports values that rise as the barrier rises. Calibrated where a splitting is still visible, the action carries the question across, and the same fraction moves phosphine's isotope ratio by sixteen per cent against ammonia's twenty-one.

7 figures
Three bands, and the isotope difference is not shared as they are. Ammonia's three transverse bands, each drawn twice: the zero-point energy it carries in NH₃ and the one it carries in ND₃, both from measured fundamentals. The pale bar is the light molecule and the solid one the heavy; the gap between them is that band's share of the isotope difference the correction has to come out of. The degenerate stretch carries half of it because it is doubly degenerate and high; the bend carries a quarter.

The band that cannot supply what it changes

A missing transverse zero-point term was sized at five per cent of the difference between two molecules' frozen frequencies, as though the five frozen modes were one thing. They are three bands carrying 26, 50 and 24 per cent of that difference, so the requirement is not one fraction but three, spanning a factor of two — and the band a flattening pyramid changes most is the one that would have to move furthest. What survives the choice is the barrier: every version implies the same bare electronic value to one and a third per cent, because every band of a pyramidal hydride has the same isotope frequency ratio.

7 figures
Two patterns, one shape, and a slope between them. How far the logarithm of each splitting falls as one hydrogen at a time is replaced by deuterium, for the ground doublet and for the first excited one. Neither falls in equal steps — the first step is half again the last — and the two patterns are the same shape: the excited step is a fixed fraction of the ground step at every stage, within a few per cent. The well is fitted to both of NH₃'s measured lines and nothing is fitted to any deuterated molecule.

The steps were a square root of a mass

Replacing ammonia's hydrogens one at a time does not lower its splitting in equal steps, and the obvious readings are the potential's shape or the tunnelling arithmetic. Both lines — the ground doublet and the first excited one, which nothing in this argument has ever been fitted to — come out straight in the square root of the reduced mass and bent against the count, by a factor of eight, so the unequal steps are the shape of a square root drawn against the wrong variable. And the excited line is the one test the missing correction cannot pass by construction: it improves it threefold and over-shoots it.

7 figures
The pucker is the flat ring's softest motion by a factor of a hundred. Every internal curvature of the flat pentagonal bipyramid under a 1/r repulsion, on a logarithmic axis: the eleven eigenvalues of the energy's second derivatives once the three rigid rotations are removed. The pair at the far left is the ring's pucker, a degenerate pair; the next motion is a hundred times stiffer with equal bonds. IF₇'s longer ring bonds make the pucker three times stiffer and leave it still thirty-four times softer than anything else.

The ring held flat by its long bonds

Given iodine heptafluoride's own composition — five long bonds and two short — the repulsion model puts the short pair on the axis, as the molecule does, and keeps the equatorial ring flat. But the flatness is the softest thing in the arrangement by a factor of a hundred. With equal bonds, a pucker of the ring costs nothing at all to second order under an inverse-square law and lowers the energy under any steeper one. What holds IF₇'s ring flat is the four per cent by which its ring bonds are longer, and that holds only under laws softer than about the 4.4th power.

7 figures
A few thousandths of the energy in a contact term puckers IF₇'s ring. For each contact law added to the Coulomb repulsion of IF₇'s bond domains, the share of the Coulomb energy the contact term must carry before the flat ring stops being a minimum, on a logarithmic axis. Steep powers need very little: 2.8 per cent at 1/r⁶, 0.16 per cent at 1/r¹². An exponential contact needs 0.09 to 2.5 per cent while its range is short — and from a range of 0.35 Å it needs an infinite amount, because it holds the ring flatter instead. So does 1/r⁴. Fluorine's own contact — the square of its 2p overlap, with Slater's exponent for the atom and for the anion — needs 0.11 and 0.16 per cent. Open circles mark the share needed with equal bond lengths, for comparison.

The fluorines' range decides the ring

IF₇'s flat ring was held by its bond lengths under every repulsion softer than about 1/r^4.4, with the fluorines left out. Put them back as a second set of repelling points and under the same law they change nothing at all — they sit on the same rays, and the model cannot tell where along a ray a point sits. They matter only as a contact repulsion of a different shape. Then a steep power puckers the ring with a few thousandths of the energy. An exponential contact puckers it only if its range is under 0.346 ångström, and a longer one holds it flatter. Fluorine's own orbital gives a range near 0.16. And the ring that puckers does not settle: its envelope and its twist differ by a ten-thousandth of the pucker's depth, so the pucker runs round the ring.

7 figures
Xenon hexafluoride's fluorines move its lone pair off the axis and through a face. At a lone-pair weight of 1.5, the energies of the capped octahedron and the edge-capped octahedron relative to the pentagonal pyramid, against the six fluorines' Born–Mayer contact repulsion as a share of the domain energy; filled dots are the lowest structure found from any nudged start. With no contact the pyramid, lone pair on the axis, is lowest by 0.063. The capped octahedron reaches it at a share of 2.3% and is the lowest from 3 per cent; in between the lowest structure has left the axis and keeps only a mirror plane.

The lone pair goes through a face

Xenon hexafluoride is the other famously floppy seven-domain molecule, and its seventh domain is a lone pair: a domain with no atom at its end, which a contact repulsion between fluorines cannot see. With the domains alone the model puts the lone pair on the axis of a pentagonal bipyramid at every lone-pair weight — a pentagonal pyramid of fluorines. Add the six fluorines' contact repulsion and, past a share of the energy that rises with the lone pair's weight, the lowest structure becomes a distorted octahedron with the lone pair through one face. Every contact law tried does this. On the way the lone pair leaves the axis continuously, and past it the molecule's floppiness is the lone pair hopping from face to face over an edge — not a ring's pucker moving round a ring.

8 figures
The capped octahedron joins the regular one as the lone pair's weight falls. How far xenon hexafluoride's six fluorines are from a regular octahedron in the capped-octahedron structure — the spread of the twelve cis F–Xe–F angles — against the lone pair's weight q, with no contact between the fluorines. As q falls to zero the spread falls to zero, at 58.5° per unit of q: a weightless lone pair leaves a regular octahedron with the lone pair over a face. With the domains alone the structure is the lowest of all below q = 0.657 (shaded); it stays a minimum up to 0.821 and is a saddle beyond (dashed).

A lone pair weaker than a bond

The repulsion model put xenon hexafluoride's lone pair on an axis at every weight VSEPR allows, and only a contact between the fluorines could move it into a face. Below the weight VSEPR allows — a lone pair that repels less than a bond, which is what an inactive pair is — it goes into a face on its own. As the weight falls to zero the distorted octahedron becomes a regular one continuously, at 58.5° of angle spread per unit weight; and between the face and the axis there is a region nobody had looked at, where the lone pair sits over an edge.

5 figures
Wherever the face is lowest, the long bonds go opposite the lone pair. For xenon hexafluoride's capped octahedron with three bonds long and three short in the ratio 1.972 : 1.856, the energy of the isomer with the long three round the face the lone pair opens, minus the isomer with them opposite, against the lone pair's weight q. Above zero the long bonds go opposite. With the domains alone the sign changes at q = 0.727, but the face is the lowest structure only below 0.657 (shaded), so wherever the model's face is lowest its long bonds sit away from the lone pair. With a one-per-cent contact between the fluorines the preference for opposite is larger and never changes sign.

The model lengthens the wrong three

Xenon hexafluoride's capped octahedron has its three longer bonds round the face the lone pair opens. Give the repulsion model three long bonds and three short and ask where it puts them: wherever the face is its lowest structure — at every lone-pair weight and every contact share mapped — it puts the long three on the opposite side. The lone pair's push on its neighbours and the fluorines' push on each other nearly cancel, and the lone pair wins only above a weight of 0.727, where the face has already given way to the edge.

7 figures