Molecular Geometry & Bonding
what the shape decides
The collection

Every essay — page 21

Page 21 of 36, continuing through the fields in the same order.

Orbitals Where the atoms go Bonding models What symmetry decides Beyond the octet What a spectrum settles When the molecule does not stop What the shape is for What is taught wrongly Series Named objects Orbitals Refutations Search

When the molecule does not stop

A chain of two hundred atoms is a molecule and behaves like a solid. Bands, gaps, metals, defects and surfaces, every one of them out of a finite matrix — and a clear account of what that route cannot reach.

⟨x²⟩ is the average number of neighbours. For each structure, the mean coordination counted off the edge list beside the mean of x² measured off the eigenvalues. They are equal by an identity about graphs, not by a limit — the full band width beside them obeys no such rule.

The width of a band is a count of neighbours

The mean of the squared level energies equals the average coordination — exactly, for any structure, with no limit taken and no periodicity assumed. It is the one statement in this field that is arithmetic rather than physics, and the usual textbook formula for band width is a special case of something weaker.

6 figures The density of states of a chain of 2000. The 2000 levels of a linear chain, binned into 34 intervals across the band, with the closed-form density drawn through them. The density piles up at both edges because that is where the level spacing turns over, and nothing periodic was assumed to get it.

A density of states is not a spectrum

A molecule's spectrum is a list of positions and a solid's is a shape, and the shape is not the density of states. Between the two sits everything the count leaves out — which transitions are allowed, how strongly, and from where to where.

6 figures Chains of 4, 16, 64, 160: the levels crowd, the edges do not move. Every level of a chain of 4, 16, 64, 160 sites, drawn at its computed energy on one axis. Adding sites adds levels inside a fixed interval rather than widening it, which is what makes the large system a band rather than a wider molecule.

A band with no structure in it

Everything in this field is computed from a finite matrix with no periodicity assumed, which is a real method and a real limitation. It produces a band and cannot produce a band structure — and the difference between those two words is worth an essay, because it is the boundary of what a finite matrix can honestly say.

5 figures How long a chain has to be before its ends stop mattering. The difference in energy per site between a ring and a chain of the same length, against that length. It falls as one over the length, which is what it means for the difference to be an end effect, and the size at which it drops below a thousandth of a β is printed.

Where a molecule stops being one

There is no size at which a molecule becomes a solid, and the useful question is a different one — how large must it be before a given property has stopped changing? The answers differ by a factor of several hundred between one property and the next, and every one of them is a measurement.

4 figures A half-filled ring's cheapest excitation goes to zero. The energy of the smallest available excitation of a half-filled ring, against the number of atoms, on log axes. Every doubling at least halves it, so in the limit there is no smallest excitation — which is what a metal is, before any band picture is drawn.

What a metal actually is

Not shiny, not a good conductor, not an element on the left of the table. A metal is a system with excitations of arbitrarily small energy, and that definition can be checked on a sequence of finite rings without drawing a band diagram or mentioning conduction at all.

6 figures A chain of 100 is more stable alternating. The electronic energy gained by alternating the bonds of a half-filled chain, the elastic cost of doing it, and their sum, all per site and all against the alternation. The sum has its best value away from zero, so the evenly spaced chain is not the stable structure.

A chain cannot stay even

Diagonalise a half-filled chain, alternate its bonds slightly, and diagonalise again. The electrons gain more than the springs lose, and they do so for every spring constant whatever — because the gain is steeper than a parabola near the origin and a logarithm beats any constant.

5 figures The gap against size: uniform against δ = 0.15. The HOMO–LUMO gap of a half-filled chain plotted against the number of sites, on log axes, for a uniform chain and for one whose bonds alternate. The uniform sequence falls without limit; the alternating one settles at four times the alternation.

The gap is not the band width

Two numbers describe a band and they answer different questions. The width is set by how many neighbours an atom has; the gap is set by how unequal they are. A structure can have a wide band and no gap, a narrow band and a large one, and changing one leaves the other alone.

5 figures benzene — D6h. The molecule with the point group found from its coordinates rather than looked up: every candidate operation was applied and kept when it permuted the atoms among themselves.

Counting electrons in an extended structure

The octet rule, Hückel's 4n + 2 and the 8 − N rule that predicts the structures of the main-group elements are one rule counted three ways. Each says the same thing — close the shell — and each stops being reliable at exactly the point where closing it becomes impossible.

6 figures The state on a defect at site 31 of 60. The amplitude of one eigenvector at each site of a 60-site chain whose site 31 has its energy raised by 1.6β. The two colours are the two signs. A state belonging to the whole chain would reach across it; this one does not.

A defect is a level in the gap

Change one site's energy in a chain of a hundred and sixty and a level leaves the band, carrying a state that lives on a handful of atoms. In one dimension it happens for any change however small — the threshold measured on chains of forty, eighty and a hundred and sixty halves with every doubling, so there is no threshold at all.

5 figures The state on the end of a chain of 60. The amplitude of one eigenvector at each site of a 60-site chain whose site 1 has its energy raised by 0.6β. The two colours are the two signs. A state belonging to the whole chain would reach across it; this one does not.

The end is the hardest place to bind

A site in the middle of a chain traps a state for any energy difference however small. The site at the end demands a whole β before it traps anything — measured at 1.025, 1.013 and 1.006 on chains of forty, eighty and a hundred and sixty, converging on exactly one. The intuition runs the other way and is wrong.

5 figures What holds matter together, per pair. Four kinds of interaction between two units of matter, each computed from the model named beside it, on a logarithmic energy scale. The range from top to bottom is a factor of several hundred, which is the number behind why a molecular solid melts hundreds of degrees below a covalent one.

What holds a solid together

Four kinds of interaction between two units of matter, each computed from a stated model and put on one logarithmic scale. The ordering is not the one usually taught — an ion pair at contact beats a shared pair, which is a fact about the comparison rather than about the numbers.

4 figures What holds matter together, per pair. Four kinds of interaction between two units of matter, each computed from the model named beside it, on a logarithmic energy scale. The range from top to bottom is a factor of several hundred, which is the number behind why a molecular solid melts hundreds of degrees below a covalent one.

The lattice sum that depends on the order of adding

An ionic solid's binding is the sum of every pair of charges in it, and the series does not converge absolutely — rearranged, it gives a different answer. That is a genuine mathematical difficulty rather than a technicality, and it is the clearest example of something a real-space, neighbour-by-neighbour method cannot compute at all.

5 figures