Molecular Geometry & Bonding
what the shape decides
The collection

Every essay — page 31

Page 31 of 36, continuing through the fields in the same order.

Orbitals Where the atoms go Bonding models What symmetry decides Beyond the octet What a spectrum settles When the molecule does not stop What the shape is for What is taught wrongly Series Named objects Orbitals Refutations Search

What symmetry decides

A molecule's point group follows from its coordinates, and it settles whether the molecule can be polar or chiral with no reference to bonding.

The current does not divide equally between equal rings. The current each ring of an acene carries under a uniform field, ring by ring, for four acenes. Naphthalene's two rings are equal by symmetry; anthracene's middle ring carries 1.180 times what its outer ones do, and tetracene's inner rings 1.222 times. Every ring has the same area and the same six carbons, and the response is a matrix rather than a set of parallel loops.

The current does not divide

A fused ring system's response was computed from the areas of its rings, and the obvious next question was whether the current divides between them the way it divides between two resistors. Giving each ring its own flux and taking the second derivatives says no: the response is a matrix, its off-diagonal entries are nearly half its diagonal ones, and anthracene's middle ring carries 1.18 times what its outer rings do.

7 figures How nearly a broken symmetry survives. A screened potential splits the n = 2 shell and destroys the degeneracy the linear Stark effect depends on. The field needed to overcome the splitting and restore the linear behaviour runs from 4.3e+4 volts a centimetre at a quantum defect of 0.00040 to 2.9e+7 at a defect of 0.208. The dipole between the states is 3.000 throughout, so the field is exactly the splitting divided by twice it.

How nearly a broken symmetry survives

The hydrogen shell's extra symmetry is what makes its Stark effect linear, and a real atom does not have it. Screening splits the shell, and the field needed to overcome the splitting and restore the linear behaviour is a curve — from forty thousand volts a centimetre at a quantum defect of 0.0004 to thirty million at a defect of 0.21.

7 figures 10 of 55 force constants that no spectrum can see. The map from methane's 55 independent force constants to its Cartesian Hessian, as a spectrum: 45 directions the frequencies respond to and 10 they do not, out of 55. The null block is exactly the size the redundancy count predicts — 10 for 1 redundancy on 10 coordinates — and the two are computed by different routes, one a rank and one a closed form. A force field quoted to four figures is quoted along 45 directions that were measured and 10 that were chosen.

Ten directions no frequency can see

A redundant force field has one obvious flat direction. There are ten: methane has fifty-five independent force constants and a ten-dimensional subspace of them that no spectrum can touch. The literature's repair is to project — and the metric a vibrational analysis is naturally written in cannot define the projection at all, because a redundancy is a null vector of it.

8 figures A species label is ambiguous for every one of 17. For each molecule, the share of its vibrations belonging to a symmetry species that appears more than once — the distortions a species label cannot price, because the label picks a space rather than a mode. Every molecule in the census has at least one such species, the share averages 71.4 per cent, and for 9 of 17 the repetition is not forced by the group's capacity — those molecules have fewer vibrations than their group could hold without repeating, and repeat anyway.

A label that prices nothing

Pricing a distortion by its symmetry species works when the species appears once. It appears more than once for every one of seventeen molecules — 71.4 per cent of their vibrations on average belong to a species that is not unique — and for nine of the seventeen nothing forces it: their groups have room to spare and they repeat anyway.

5 figures A length that keeps growing, and one that stops. The fitted decay length of the ring-current response, against the number of rings. The bare acene's runs 1.397, 1.669, 1.896, 2.104, 2.302 — up by a factor of 1.65 and still climbing — while its own gap falls from 0.590 to 0.1102. With a gap held open the same measurement gives 0.678, 0.642, 0.636, 0.636, 0.639, which has stopped moving by the third molecule. There is a magnetic reach, and an acene is too nearly gapless to have one.

A reach that has no length

A ring current's response to a neighbouring ring falls with distance, which invites asking for the length. Every acene computed gives a longer one — 1.397, 1.669, 1.896, 2.104, 2.302 rings — because the gap that would set the length is closing at the same time. Give the same molecule a gap that stays open and the number settles at 0.636 by the third one and does not move.

6 figures Where the explanation gives a negative number of vibrations. The usual formula against the answer, for the 15 molecules with internal coordinates here. It is right for 7 of them and wrong for 8, and for sulfur hexafluoride, benzene and both ferrocenes it predicts a negative number of totally symmetric vibrations — which is the clearest possible sign that the quantity being subtracted is not the one that should be.

A formula that predicts minus eleven vibrations

A molecule's count of totally symmetric vibrations is often explained as one per orbit of internal coordinates, less one per redundancy, with methane as the worked example. Computed for fifteen molecules it is right for seven and wrong for eight — and for sulfur hexafluoride, benzene and both ferrocenes it returns a negative number. Two independent corrections turn it into an identity.

7 figures Two events, not one — and both below the n = 2 shell's. The field at which each coupled pair's shift stops being quadratic and starts being linear, for the n = 3 shell and for the n = 2 shell. The n = 3 shell has two, a factor of 3.66 apart, and both are far below n = 2's single one — so the linear effect returns is two events in a shell with a d, and it happens at a field thirty times weaker than in a shell without one.

Two events where there was one

A broken symmetry returns at a field where the coupling matches the gap it has to overcome, and in a shell with two levels that field is a single number. The next shell up has three, two gaps and two dipoles — so there are two crossovers, a factor of 3.66 apart, both of them below the single one of the shell below, and the exponent takes more than a decade of field to travel between them.

6 figures 6 rings fused two ways. Two catacondensed chains of 6 hexagons: the linear one, where every fusion continues the line, and the angular one, where the fusions alternate. They have the same formula and the same number of bonds and they are not the same graph. Ring centres are numbered; in the linear molecule two rings k steps apart have centres 1.7321k units apart and in the angular one they do not, which is the whole reason this pair can be asked the question.

Neither of the two separations

A linear acene cannot pose the question, because the number of fusions between two rings and the distance between their centres are the same variable there. Bending the molecule pulls them apart — and the response follows neither. Two pairs of rings the same distance apart differ by two thirds, and the larger one is at the greater distance.

7 figures Every crossover a shell has. The field at which each coupled pair's linear behaviour returns — the gap between the two levels divided by twice the dipole joining them — on a logarithmic axis. The n = 3 shell has 3 distinct fields rather than four, because its m = ±1 half is a two-level ladder with one coupled pair. All three are below the n = 2 shell's single one.

Three events, and a ratio of two dipoles

The m = 0 half of a shell has two crossovers because it has three levels and two coupled pairs. The other half has two levels and one, so the whole shell has three distinct fields rather than four — and two of the three share a gap exactly, which makes the ratio between them a ratio of two dipoles, 2/√3.

6 figures The end pair against the deepest pair, at each separation. For each separation, the response of the pair that touches an end divided by the response of the pair at the same separation sitting deepest in the molecule. A straight chain is below one at every separation and a zigzag is above one at every separation, so the end effect has opposite signs on the two shapes. The third chain — two straight arms meeting at one angular ring — is above two at three separations and below one at the fourth, which is a third behaviour and not an intermediate one.

An end effect with two signs

Neither of two separations accounts for the scatter in a fused ring system's response, and the natural guess is the end: pairs with more molecule outboard should behave differently from pairs at an edge. They do. In a straight chain an end pair responds a third less than an interior one, in a zigzag a quarter more, and in a chain of two straight arms meeting at one angular ring the anomaly is in the middle.

6 figures One turned fusion, moved along the chain. Chains of 9 rings differing in one integer: which fusion's direction is turned. Turned at the first or last fusion, that leaves one angular ring beside an end; anywhere between, it leaves two adjacent angular rings whose turns cancel. The widest ratio between two pairs at the same separation, against which fusion is turned. A straight chain gives 1.520 and every bent one gives more — from 3.052 to 4.600. The two ends of the curve are the one-ring members; every interior point is a two-ring step.

One integer, and everything it changes

Eight molecules with the same rings, the same carbons and the same graph distance between every pair, differing in which fusion's direction is turned — one angular ring when the turned fusion is at an end, two adjacent ones anywhere else. The scatter within a separation class runs from three to four and a half times, against a straight chain's one and a half — and the two ends of one molecule disagree by up to a factor of four.

6 figures Tilting the field raises the count, and then lowers it again. How many distinct fields the shell has an event at, against the angle between the field and the z axis. Along either axis there are 3; at a general tilt every one of the 6 coupled pairs has its own field and there are 6. In between the count comes back down at four angles where two events coincide, and at forty-five degrees two separate coincidences happen at once.

Four angles the shell chooses

A field along one axis gives a shell of nine functions three fields with an event, and tilting the field should separate the coincident ones and raise the count towards the number of coupled pairs. It does — from three to six. But not monotonically: at four angles two events collide again, and every one of those angles is the arctangent of a ratio of the shell's own angular integrals.

6 figures