Molecular Geometry & Bonding
what the shape decides
The collection

Every essay — page 17

Page 17 of 36, continuing through the fields in the same order.

Orbitals Where the atoms go Bonding models What symmetry decides Beyond the octet What a spectrum settles When the molecule does not stop What the shape is for What is taught wrongly Series Named objects Orbitals Refutations Search

Where the atoms go

VSEPR as a repulsion minimisation rather than a table, the angles that fall out of it, and the case where five sites are not all alike.

4 sites, minimised. The arrangement of 4 points on a sphere that minimises their mutual repulsion. The angles printed were measured off the result rather than quoted, and the shape was not assumed.

VSEPR, computed

The tetrahedral angle is not 109.5 degrees because a textbook says so. It is arccos(−1/3), and it falls out of minimising the repulsion of four points on a sphere without ever being written down.

8 figures Five sites are not five of a kind. The minimised arrangement of five points, with the two axial sites marked apart from the three equatorial ones. Their neighbour angles differ, so the two kinds of position are genuinely different places — which the shape's name does not convey.

Five sites are not alike

Every other common arrangement has one or two distinct angles. Five has three, because two of its positions are on an axis and three are round an equator — and a molecule built that way does something about it.

6 figures water — C2v. The molecule with the point group found from its coordinates rather than looked up: every candidate operation was applied and kept when it permuted the atoms among themselves.

Why water is bent

The standard answer is lone pair repulsion, it predicts the right direction, and it cannot predict the magnitude. A better rule can, and the heavier hydrides show where both accounts run out.

5 figures Eight points: the cube loses. The cube and the minimised arrangement of eight points on a sphere, with the repulsion energy of each computed. The minimum is a square antiprism — the cube twisted by forty-five degrees on one face — and the margin is about one part in three hundred.

The shapes above six coordination

Eight points on a sphere do not arrange themselves in a cube. They twist one face by forty-five degrees, and above six the arrangements stop being the ones anybody would name and start being the ones a minimisation finds.

7 figures sp3 hybrids. The directions the hybrids point, with the angle between them computed from the coefficients rather than quoted. The set is an orthogonal transformation of the atomic orbitals, so it describes the same space in different coordinates.

Bent's rule, against the substituent series

More electronegative substituents get more p character, so the angle between them shrinks. The rule predicts a trend, the trend is observed, and the quantity it depends on turns out not to be one quantity.

5 figures Bond angle against lone-pair weight, 2 lone and 2 bonding. The bond angle a weighted repulsion minimisation gives for 2 lone pairs and 2 bonding pairs, as the lone-pair weight runs from one to 3.2. The marked molecules are water and hydrogen sulfide, each placed at the weight that reproduces its measured angle.

What a lone pair is worth

A lone pair repels more than a bonding pair, says VSEPR, without saying how much more. Put a number on it and fit that number to water, and the same number is wrong for hydrogen sulfide by a factor of two — which means it was never a property of a lone pair.

6 figures Angles at exponents 1, 2, 3, 6, 12. The distinct angles of the minimised arrangement of 4, 5, 6, 7 points, under a repulsion going as one over r to the power 1, 2, 3, 6, 12. Where the arrangement is the maximally symmetric one the angles do not move at all; where it is not, both the angles and how many of them there are depend on the law assumed.

Which angles are symmetry and which are the model

VSEPR says electron pairs repel and never says by what law. For four, five and six domains it makes no difference whatever — change the exponent by a factor of twelve and not one angle moves. For seven it decides the answer.

6 figures The s character a bond angle requires. The fraction of the one s orbital each of two equivalent hybrids must carry in order to meet at a given angle, from pure p at 90 degrees to half s at 180. The marks are measured bond angles — H₂O, NH₃, H₂S, PH₃ — and the column beside them is the budget each implies: what one bond hybrid takes, and what is left for the lone pairs to share. The relation is orthogonality, not a model of bonding, and nothing here is fitted.

The angle does not fix the hybridisation

Two equivalent hybrids are orthogonal only at one relation between their s character and the angle between them. Run it backwards on measured bond angles and water's bonds come out sp³·⁹⁹, hydrogen sulfide's sp²⁷, and phosphine's lone pair takes eighty-four per cent of the one s orbital.

5 figures One dihedral, three point groups. Hydrogen peroxide built at 13 values of its dihedral angle, with the point group searched for from the coordinates at each. The group is C2v when the hydrogens eclipse, C2h when they are anti, and C2 at every angle strictly between. The rails below are what the group settles on its own: the molecule may be polar except at the anti arrangement, and it is chiral except at the two ends. No energy is computed anywhere, and the marked angle is the measured one rather than a minimum found here.

One coordinate, three point groups

Hydrogen peroxide has four atoms and one soft internal coordinate. Turning it from nought to a hundred and eighty degrees takes the molecule through C2v, C2 and C2h — so it is chiral at every angle but two, and forbidden a dipole at exactly one of them.

8 figures The moment that does not depend on where the origin is. For each molecule, the dipole and the largest quadrupole component about the centre, and the same two about an origin moved 1.6 bohr away. The lowest non-vanishing moment is unchanged in every row and the one above it moves in every row. The 4 non-polar molecules here have a quadrupole that is a property of the molecule; the polar ones have one that is a property of a choice.

What a dipole cannot tell apart

A dipole moment is three numbers extracted from a whole charge distribution, and enormously many distributions give the same three. The moment above it is not even a property of the molecule unless the one below it vanishes — which is why a quadrupole is quoted with an origin and a dipole is not.

4 figures How far two hybrids are from orthogonal. The overlap between two equivalent s–p hybrids of a stated label, against the angle between them. Each curve crosses zero at exactly one angle — sp3 at 109.47°, sp2 at 120.00°, sp at 180.00° — and a molecule whose measured angle is not that angle has hybrids that overlap. The largest here is cyclopropane at 0.63.

Hybrids that were never orthogonal

Two sp³ hybrids are orthogonal at 109.47° and nowhere else. Water's are drawn at 104.5° and overlap by 0.062; cyclopropane's are drawn at 60° and overlap by 0.625, which is not a small correction to a basis but a description that has stopped being one.

5 figures The largest angle each ring size can have. The ceiling on a bond angle in a closed ring of equal bonds, 180°(n−2)/n, which is the interior angle of the regular planar polygon and follows from a closed curve having to turn through a full circle. The line at 109.47° is the tetrahedral angle: rings of 3, 4, 5 atoms cannot reach it at any geometry whatever, and every larger ring can, by leaving the plane.

The angle a ring cannot have

A closed ring of equal bonds has to turn through a full circle, so its bond angles cannot average more than 180°(n−2)/n. Three, four and five atoms are below the tetrahedral angle at every geometry whatever; six is above it, and reaches it only by leaving the plane.

5 figures