Molecular Geometry & Bonding
what the shape decides
Concept

Overlap — where it appears

The integral of the product of two orbitals over all space. Its size decides how strongly they interact and its sign decides which combination lies lower, and it is not a monotonic function of how close the atoms are.

Named by 8 essays across 4 fields — each of them below, with the objects they name alongside it.

One metal orbital, two ligands competing for it. Metal–ligand bond orders in a three-orbital model as the left-hand ligand's interaction is turned up. Its own bond order rises and the bond order to the ligand opposite falls, from 0.62 at equal strengths to 0.42 at the strongest. Nothing else in the model can carry the effect: switch the second bond off and it vanishes exactly.

The trans influence is an overlap argument

Two ligands on opposite sides of a metal both bond through the same metal orbital, and there is only one of it. Strengthen one and the bond order to the other falls — computed exactly on three levels, and measured as a bond length that grows by a tenth of an ångström.

applied · Overlap Overlap does not always fall as the atoms are pulled apart. The overlap integral of two pairs of orbitals against the separation between their centres, with the turning point and the sign change of each found by bisection on the integral itself. A pair with a radial node in it does not fall monotonically and does not keep one sign.

Closer is not more overlap

Two 1s orbitals overlap more the closer they are, and every curve drawn from that pair says the same thing. Put a radial node into one of them and the rule fails: a 1s with a 2s overlaps by 0.016 at contact, by 0.282 near four bohr, and less again beyond — and two 2p orbitals head-on change sign at 5.06 bohr and are more strongly coupled at eight bohr than at four.

bonding · Overlap The cliff, and the slope leading to it. The smallest eigenvalue of the overlap matrix, and what an extra function is worth, as that function is brought towards one already in the basis. Both fall together, and the energy stops improving long before the matrix stops being invertible.

A function that is already there

Adding a function to a basis set can only lower the energy, so a bigger basis is a better one. What that leaves out is that the same act makes the functions less independent: an optimised basis's smallest overlap eigenvalue halves with every function added, and a function placed on top of one already present buys less than a millionth of what a well-placed one buys while driving that eigenvalue to 4×10⁻¹⁰ — past which the calculation is refused outright.

orbitals · Basis Where two bands lie, as their centres are pulled apart. The σ band and the π band of a two-orbital chain, drawn as the intervals they occupy, against the difference in site energy between the two orbitals. Below a difference of 3 the two intervals overlap and the filled-band count stops deciding anything.

A full band is not an insulator

Two electrons per atom, two orbitals per atom, and the lower set exactly full: the count says insulator, and magnesium is a metal. The count is not wrong about the count. What it assumes is that the two sets of levels occupy separate ranges of energy, and whether they do is a comparison of four numbers that has nothing to do with how many electrons there are.

wrong · Metal The part of the bond that is outside the picture. The share of the overlap integral between two 1s orbitals that lies outside both of their 90 per cent contours, against how far apart the atoms are. At a bond length it is 8.3 per cent; by 7 bohr it is 53.4. The two drawn surfaces stop touching at 5.32 bohr, where the overlap is still 0.08 — so the picture separates well before the interaction does.

The tenth that is not drawn

A ninety per cent contour of a hydrogen 1s orbital is a sphere of radius 2.661 bohr, and two of them stop touching at 5.322 bohr — where the overlap between the two orbitals is still 0.0768 and rising in importance. At a three-ångström contact, 36.9 per cent of the overlap integral lies outside both drawn surfaces, and holding nine tenths of it inside the picture would take a contour enclosing 97.28 per cent.

orbitals · Contour The acceptors' π* levels, as measured. For each π acceptor: the energy at which a slow electron is temporarily captured, which is the π level above the vacuum, and the π scale this collection's series carries for it. Carbon monoxide's and dinitrogen's resonances are measured on the molecule itself; cyanide's cannot be, because an electron cannot be attached to an anion, so hydrogen cyanide's stands in for it — the same π with a proton where the metal would be.

A denominator that fails both ways

The energy gap an e_π folds away over-predicts the halide trend at every metal level a donor allows, and the acceptors look out of reach because a π* is not an atomic level. It is measurable — a slow electron is captured by it — and on that side the same denominator under-predicts. No metal level fixes either, and the two want it moved in opposite directions.

applied · Ligand field A pair with no overlap, and a third orbital swept past it. The three levels of a trio in which the two outer orbitals have exactly no overlap with each other, as the third orbital's energy is swept. The middle line is at -13.6 at every point — the antisymmetric combination of the two, which has no partner of its own symmetry and cannot mix with anything. The other two move, so the pair is split by an orbital it has no direct contact through.

A bond order between atoms that do not interact

A diatomic held where its overlap changes sign has no interaction between its two orbitals at all — which is what the sign change of its overlap means. Put a third orbital beside it and the pair is still split, one line sits exactly at the free-atom energy at every third-orbital energy, and the bond order between the two runs to −0.9999. Three measures of the same bond disagree completely.

wrong · Overlap A bond is a cosine in momentum space. The two factors a two-centre bonding orbital's momentum density is made of. One is the atomic momentum density, unchanged by the bond and falling as the eighth power of the momentum. The other is cos²(q·R/2), the interference between the two centres, whose period is fixed by the bond length and by nothing else. Everything that distinguishes a bond from two atoms in this picture is that cosine — and it has zeros where the atomic factor has none.

Oblate in the picture nobody draws

Every drawing of a σ bond shows a density stretched along the bond, and the position-space calculation agrees: the second moment along the axis is twice the one across it. In momentum the same orbital is flattened in the same direction, because the interference between the two centres cuts the distribution off at π over the bond length — and that cut-off is a zero a measurement could find.

orbitals · Orbital

Named alongside it

The objects these essays reach for when they reach for this one.

Closed formOne-electron modelsModel limitAntibondingBond orderConventionConvergenceDegeneracyElectron countLigand fieldOverlap integralProbability density

All concepts