Molecular Geometry & Bonding
what the shape decides
Concept

Valence force field — where it appears

A set of force constants keyed to bonds and angles rather than to atoms. Every constant in one is fitted to observed frequencies, so a frequency it reproduces is not evidence for the model that produced it.

Named by 13 essays across 3 fields — each of them below, with the objects they name alongside it.

H₂O: 3 distinct modes. The displacement of every atom in 3 normal modes of H₂O, drawn from the eigenvectors of the mass-weighted Hessian. Under each is the internal coordinate with the largest share of the motion and how large that share is; where no coordinate holds nine tenths, the mode is not a motion of one bond or one angle and is labelled so.

Normal modes are not bond stretches

Water has two stretching frequencies and two O–H bonds, and it is almost irresistible to pair them off. Computed, each mode is exactly half in one bond and half in the other, and neither frequency belongs to a bond at all.

spectra · Normal mode ¹¹BF₃: what each mode is made of. ¹¹BF₃. Each row is one distinct frequency and each column one internal coordinate; the bar is the share of the motion in that coordinate. A mode whose largest share reaches nine tenths is a motion of one bond or one angle and is named for it. 1 of 4 here are.

Group frequencies, and where they stop

A carbonyl band sits near 1,700 wavenumbers in every ketone anybody looks at, and that regularity is real. Computed for a set of small molecules, four of twenty-one distinct frequencies belong to a single internal coordinate — and the four are exactly the coordinates symmetry leaves alone.

spectra · Normal mode Every force field the spectrum permits. 5 force fields for H₂O, each one refitted with rr:O:H,H held at the value on the axis, and every one of them reproducing all of the molecule's own frequencies. The heavy line is the error each makes on the isotopologue it was never fitted to. The spectrum cannot choose between these fields; the isotopologue can.

The force field is not in the spectrum

Water has three vibrational frequencies and its force field has four constants, so the spectrum cannot determine the field. A whole family of quite different fields reproduces all three frequencies exactly, and only a second isotopologue can tell them apart.

wrong · Normal mode 6 fitted force fields. Every valence force field fitted here, ordered by the size of its bond stretching constant, with the stretching frequencies of the molecule beside it. The two orders are not the same, which is the whole of what separates a force constant from a frequency. The last two columns say how many constants were fitted to how many observed frequencies, and a field with as many of the first as the molecule has distinct frequencies fits exactly and reports nothing.

The frequency is not the bond strength

Sulfur dioxide's S–O force constant is larger than water's O–H constant, and its stretching bands sit at a third of the frequency. A vibrational frequency carries a mass as well as a force, and the two cannot be separated by looking at a spectrum.

wrong · Normal mode H₂O: 3 distinct modes. The displacement of every atom in 3 normal modes of H₂O, drawn from the eigenvectors of the mass-weighted Hessian. Under each is the internal coordinate with the largest share of the motion and how large that share is; where no coordinate holds nine tenths, the mode is not a motion of one bond or one angle and is labelled so.

The six motions that are not modes

Three N minus six is quoted in every textbook and the six are almost never computed. Diagonalising a mass-weighted Hessian gives six eigenvalues at arithmetic noise, and projecting their vectors onto the three translations and three rotations written down from the geometry alone accounts for every one of them.

spectra · Normal mode boron trifluoride at 1454 cm⁻¹, shared out four ways. One mode of boron trifluoride, with each internal coordinate's share of it computed by four conventions. Each convention is a bar in every group; the groups are the coordinates. A number quoted for this band without saying which bar it is has not said much.

How much of a band is a bond stretch

Boron trifluoride's 1454 cm⁻¹ band is 36.7 per cent B–F stretch, or 49.9, or 97.9, depending on which of four standard ways of sharing a mode out among internal coordinates is used. All four are defensible, all four sum to one, and the spread between them is sixty-one percentage points on one band of one molecule.

spectra · Normal mode How many coordinates, and how many motions. For each of six molecules, one square per internal coordinate the valence set carries — bond stretches, angle bends and an out-of-plane wag where there is one — with a rule drawn at the number of vibrational degrees of freedom. three of them have more coordinates than motions, and which ones is decided by shape rather than by size: ammonia's three angles are independent and boron trifluoride's are not, and the only difference is that one is flat.

More coordinates than motions

Methane has ten internal coordinates and nine ways to vibrate, boron trifluoride seven and six, formaldehyde seven and six. The excess is not bookkeeping: it is a combination of coordinates that describes no displacement of any atom, and adding twenty-five units of force constant along it moves every frequency by five parts in a hundred million.

symmetry · Normal mode The shallowest slope, and the steepest. For three molecules, the softest and stiffest vibrations, the species each belongs to, and what a unit distortion along each costs. The cost is not taken from the frequency: it is computed by resolving the distortion onto the normal coordinates in the mass-weighted metric and adding up ω²q². That it comes back as the frequency is the identity the whole comparison rests on — the species decomposition uses only the coordinates and the group, and the cost uses only the masses and the force constants, and the two have to agree on this case before they can be asked to disagree on any other.

The coordinate it was already soft along

A distorted structure can be resolved into the symmetry species of its ideal group, and that resolution cannot say which coordinate a molecule fell down by itself and which one something outside pushed it along. The force field answers that, and the two halves agree on the case where they must — a unit distortion along a normal mode costs exactly that mode's frequency, to a part in a million, computed from masses and force constants by one side and from coordinates and characters by the other.

symmetry · Point group A ratio that measures a distortion, and squares it first. How far ammonia's depolarised bands come off three quarters against how far one of its bonds has been stretched. Undistorted the departure is 3.1e-8, which is the rounding in the stored coordinates rather than a physical effect; at 0.1 Å it is 0.04239, and the slope is 1.999 — the departure goes as the square of the distortion, so a ratio measured to three decimals fixes a length to one and a half.

A ratio that squares what it measures

A depolarised Raman band sits at exactly three quarters because symmetry says its mean polarisability derivative is zero. Distort the molecule and it comes off — by 4.5 × 10⁻⁴ for a hundredth of an ångström and 0.042 for a tenth, going as the square of the distortion, which makes a ratio measured to three decimals a length known to one and a half.

spectra · Spectrum 10 of 55 force constants that no spectrum can see. The map from methane's 55 independent force constants to its Cartesian Hessian, as a spectrum: 45 directions the frequencies respond to and 10 they do not, out of 55. The null block is exactly the size the redundancy count predicts — 10 for 1 redundancy on 10 coordinates — and the two are computed by different routes, one a rank and one a closed form. A force field quoted to four figures is quoted along 45 directions that were measured and 10 that were chosen.

Ten directions no frequency can see

A redundant force field has one obvious flat direction. There are ten: methane has fifty-five independent force constants and a ten-dimensional subspace of them that no spectrum can touch. The literature's repair is to project — and the metric a vibrational analysis is naturally written in cannot define the projection at all, because a redundancy is a null vector of it.

symmetry · Normal mode The two molecules with a direction no spectrum can see. Methane's fifty-five independent force constants and boron trifluoride's twenty-eight, split into the combinations a spectrum determines and the ones it cannot touch. Both molecules have a redundant coordinate set — methane's six angles at a tetrahedral centre are five coordinates' worth, and boron trifluoride's three angles at a planar centre are two — so both have a flat space, and the smaller molecule's is the larger share of its field.

The second molecule with a blind spot

Methane's fifty-five force constants have ten directions no spectrum can touch, and the forty-five that are fixed were worth a table. Boron trifluoride is the only other molecule here with a redundant coordinate set, and it is not the same case: eight kinds of constant rather than five, a quarter of its field invisible rather than a fifth, and an out-of-plane coordinate the redundancy cannot reach.

spectra · Normal mode One isotopologue converges and two run away. Methane's force field refitted with the bend–bend constant restored, to the light molecule alone and to both isotopologues. The first converges to an ordinary field with a C–H constant of 5.42. The second walks along the direction no frequency can see until two constants reach minus ninety-seven thousand, equal to four figures and opposite in effect. Adding data made it worse.

Adding data made it worse

A projection leaves a residual spread across four starting points, and an earlier essay attributed it to the eigenvalue problem rather than to the coordinate set — an attribution rather than a measurement. Refitting with two isotopologues was the proposed test. Run, it produces a runaway to minus ninety-seven thousand that one isotopologue alone does not, and the reason is that the direction it walks along is flat at every mass.

spectra · Normal mode Every exact fit lies on one closed curve. The one-parameter family of force fields that reproduce all six of boron trifluoride's frequencies exactly, drawn in the B–F stretch constant and the stretch–bend coupling. It is a closed curve: the stretch constant runs from 3.94 to 12.11 millidyne per ångström and the coupling from -0.36 to 6.71. The four fits from four starting points sit together in one small patch of it.

The residual was a loop

Projecting away boron trifluoride's flat direction left four fits disagreeing by a tenth in the B–F stretch constant, and the disagreement was put down to the search or to the arithmetic. It is neither. Two frequencies cannot fix three constants in one symmetry block, so the exact fits form a closed curve along which the stretch constant runs from 3.9 to 12.1, and the four fits are four points on a short arc of it.

spectra · Normal mode

Named alongside it

The objects these essays reach for when they reach for this one.

Force constantNormal modeVibrational modesLeast-squaresInternal coordinateMode compositionModel limitUnderdeterminationConventionDegeneracyHarmonic approximationIsotopologue

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