Molecular Geometry & Bonding
what the shape decides
Concept

Surface — where it appears

The boundary of an extended structure, where sites have fewer neighbours than inside. A surface site keeps far more of its binding than it keeps of its bonds, because binding grows more slowly than coordination.

Named by 4 essays across 3 fields — each of them below, with the objects they name alongside it.

How long a chain has to be before its ends stop mattering. The difference in energy per site between a ring and a chain of the same length, against that length. It falls as one over the length, which is what it means for the difference to be an end effect, and the size at which it drops below a thousandth of a β is printed.

Where a molecule stops being one

There is no size at which a molecule becomes a solid, and the useful question is a different one — how large must it be before a given property has stopped changing? The answers differ by a factor of several hundred between one property and the next, and every one of them is a measurement.

solids · Bands in a solid The state on the end of a chain of 60. The amplitude of one eigenvector at each site of a 60-site chain whose site 1 has its energy raised by 0.6β. The two colours are the two signs. A state belonging to the whole chain would reach across it; this one does not.

The end is the hardest place to bind

A site in the middle of a chain traps a state for any energy difference however small. The site at the end demands a whole β before it traps anything — measured at 1.025, 1.013 and 1.006 on chains of forty, eighty and a hundred and sixty, converging on exactly one. The intuition runs the other way and is wrong.

solids · Defect The surface-honest curve and the page-honest curve. The 2pz orbital in its xz plane, drawn twice. The outer curve is the contour whose SURFACE encloses 90.0 per cent of the density in space — the claim every orbital figure here makes — and in this plane it encloses 96.7 per cent. The inner curve is the one that encloses 90 per cent in the plane, which is what a reader looking at a flat picture would take the caption to mean. The two levels differ by a factor of 1.87 and the curves differ visibly; the caption does not. Contours drawn: 2pz at 90% of its density, |ψ| = 9.48e-3.

A slice is not the surface

The page is flat, so every printed orbital is a slice through a contour rather than the contour itself — and a curve that leaves a tenth of the density outside it in space leaves about a thirtieth outside it on the page. Both claims are true of the same picture and only one of them is ever stated.

orbitals · Contour The whole difference lives at the two ends. The energy difference between the two dimerisations of an open chain, held at the same distortion, multiplied by the number of sites. It settles on a constant — 1.09 in units of the hopping — so the difference per site falls as one over the length, with a fitted exponent of -1. An end is a bond that is not there, and it is worth the same amount whatever it is attached to.

The distortion the ends decide

A chain of an even number of sites has an odd number of bonds, so its two dimerisations are different molecules rather than one molecule translated. Held at the same distortion they differ by 1.08715 in units of the hopping, whatever the length — a fixed amount of energy living at the two ends, with the per-site difference falling as one over the length at a fitted exponent of −0.99986. And below a hundred and twenty-eight sites the second dimerisation does not exist at all.

applied · Peierls distortion

Named alongside it

The objects these essays reach for when they reach for this one.

Bands in a solidBand edgeEnergy per siteThermodynamic limitAngular nodeApproximationBand gapBond alternationContour levelConventionConvergenceCoordination number

All concepts