Molecular Geometry & Bonding
what the shape decides
Concept

Bond dipole — where it appears

A dipole moment assigned to one bond so that a molecule's total can be written as a vector sum. The assignment is not unique and the several definitions in use disagree, which is why the symmetry argument is the reliable one.

Named by 10 essays across 3 fields — each of them below, with the objects they name alongside it.

What the group settles. For each molecule, the point group found from its coordinates and the two properties that follow from the group alone. Neither column required knowing anything about the bonds.

The dipole is not a sum of bonds

Adding bond dipoles as vectors gets the easy cases right and rests on a quantity with several incompatible definitions. The symmetry argument is exact, needs no electronegativities, and says when the answer must be zero.

wrong · Dipole One dihedral, three point groups. Hydrogen peroxide built at 13 values of its dihedral angle, with the point group searched for from the coordinates at each. The group is C2v when the hydrogens eclipse, C2h when they are anti, and C2 at every angle strictly between. The rails below are what the group settles on its own: the molecule may be polar except at the anti arrangement, and it is chiral except at the two ends. No energy is computed anywhere, and the marked angle is the measured one rather than a minimum found here.

One coordinate, three point groups

Hydrogen peroxide has four atoms and one soft internal coordinate. Turning it from nought to a hundred and eighty degrees takes the molecule through C2v, C2 and C2h — so it is chiral at every angle but two, and forbidden a dipole at exactly one of them.

shape · Dipole The moment that does not depend on where the origin is. For each molecule, the dipole and the largest quadrupole component about the centre, and the same two about an origin moved 1.6 bohr away. The lowest non-vanishing moment is unchanged in every row and the one above it moves in every row. The 4 non-polar molecules here have a quadrupole that is a property of the molecule; the polar ones have one that is a property of a choice.

What a dipole cannot tell apart

A dipole moment is three numbers extracted from a whole charge distribution, and enormously many distributions give the same three. The moment above it is not even a property of the molecule unless the one below it vanishes — which is why a quadrupole is quoted with an origin and a dipole is not.

shape · Dipole The bond sum, the measurement, and what is left over. For each pyramid: the vector sum of three bond moments estimated from the electronegativity difference and the measured geometry, the measured dipole, and the difference between them. Positive is towards the lone pair. Ammonia's bonds point that way and nitrogen trifluoride's point the other, which is why the trifluoride's far more polar bonds give it a dipole six times smaller. The leftover is 0.58 D for ammonia and at least 1.48 D for the trifluoride, so it is not one lone pair's property.

The lone pair is not the missing term

Ammonia's dipole is 1.47 debye and nitrogen trifluoride's is 0.235, although the N–F bonds are far more polar than the N–H ones. The bond sums explain the reversal exactly and point in opposite directions — and the lone pair that is supposed to make up the difference has to be worth 0.58 debye in one molecule and at least 1.48 in the other.

shape · Dipole Bonds the scales disagree about. For each bond, which atom each scale calls the more electronegative. Every row is a bond whose polarity would be drawn in opposite directions depending on which of these four tables in common use was consulted: Pauling, Mulliken, Allred–Rochow, Allen.

A ranking is not a difference

Four electronegativity scales agree about order to a Spearman coefficient of 0.99 and disagree about size by a factor of sixty-two. Put each on its own range and the O–H bond is 39 per cent of the way across on three scales and 4.5 on the fourth.

wrong · Electronegativity Carbon is not one number. The charge equalisation puts on carbon in the four fluoromethanes, and on hydrogen in the three that have one. Carbon's runs from 0.07 to 0.31, and hydrogen's changes sign between methane and fluoromethane, so the same C–H bond is polarised one way in one molecule and the other way in the next. A table with one number for carbon is printing the value an iteration starts from.

The value that only exists in the bond

A difference in electronegativity moves charge, and moving charge closes the difference — until every atom in the molecule has the same chemical potential. Solving that gives one number per molecule and a charge per atom, and carbon's runs from +0.0692 in methane to +0.3074 in tetrafluoromethane. Hydrogen's changes sign between the first and the second, so the same C–H bond is polarised one way in one compound and the other way in the next.

bonding · Electronegativity Four tables, one answer, and a reason it could not be otherwise. The intensity–motion correlation — infrared intensity against how far the atoms move — computed with charges from four published electronegativity tables. Every molecule gives the same number on all four, to machine precision, because each is made of two elements: its charges are one number times a fixed pattern, a change of table changes only that number, and a rank correlation does not notice a rescaling. The dipole moments beside them do notice, which is the check that the tables are genuinely different.

The table that could not have mattered

Charges taken from one of four electronegativity tables invite a worry, because the tables disagree with each other. They do disagree — hydrogen cyanide's dipole runs over a factor of eleven between them — and for the molecules in question the worry could not have applied, because a molecule of two elements has charges that are one number times a fixed pattern and a rank correlation does not notice a rescaling.

shape · Dipole Twelve hydrogen bonds, four tables. The bond dipole of hydrogen against each partner, in debye, on each of the four tables after all four are anchored to the same hydrogen–fluorine separation. Positive is hydrogen at the positive end. A bond whose marks straddle the axis is one the tables disagree about the direction of, and there are 3 of them.

Four tables and one molecule to disagree about

A molecule of two elements is provably safe from the choice of electronegativity table, and a series down a group should land where the tables do disagree. It does. All four agree that hydrogen iodide is the exception — and they disagree about what its dipole is by 1.245 debye, which is two and a half times the 0.448 that was measured.

shape · Dipole One number separates the disputed bonds from the agreed ones. Every bond in the collection, ordered by how big its electronegativity difference is as a fraction of each table's range. The six the tables disagree about are all below 0.0507; the 25 they agree about are all above 0.0584. Nothing lies between, and which elements a bond joins does not enter — a dispute is what happens when the difference is small enough that the tables' own disagreement about it is larger.

A dispute is a small difference

Four electronegativity tables disagree about the direction of a quarter of a set of hydrogen bonds, and the interhalogens look like the natural test: five compounds with no hydrogen in them, to say whether the disagreement is about one awkward element or about the whole idea. All four tables agree about every interhalogen. They agree because the differences are large, and that is not a fact about halogens.

shape · Dipole The gap closed when the other hundred and twenty-two pairs arrived. Every pair sorted by the size of its normalised electronegativity difference: the 31 common bonds on the left, all 153 pairs the four tables cover on the right. Filled marks are pairs the four tables put on different sides of zero. On the small set they are the 6 smallest with nothing in between; on the full set 27 uncontested pairs sit below the largest contested one.

A gap that was a choice of bonds

One number separates every disputed bond from every agreed one with nothing in between — on thirty-one bonds, which is enough to see a gap and not enough to know it is real. It is not real. The line is in the same place on all one hundred and fifty-three pairs the four tables cover, and twenty-seven agreed pairs now sit below the largest disputed one.

shape · Dipole

Named alongside it

The objects these essays reach for when they reach for this one.

ElectronegativityDipole momentPartial chargePolarityPauling scaleConventionModel limitMulliken scaleLone pairPoint groupUnderdeterminationEmpirical scale

All concepts