Spectrum — the series · Molecular Geometry & Bonding

6 molecules, counted. How many vibrations each molecule has, how many symmetry species they fall into, and how many frequencies are infrared active, Raman active, both, or neither. Every column after the first counts frequencies rather than modes, because a degenerate pair is one line in a spectrum. The molecules with a centre of inversion are the ones with nothing in the both column — mutual exclusion as a computed count. Nothing here uses a force constant.

How many frequencies, not how many modes

Benzene has thirty vibrations. It has twenty distinct frequencies, and of those, eleven can be seen — four in the infrared and seven in the Raman, with no band in common. The other nine are invisible to both experiments, exactly.

part 1 · spectra

4 molecules, counted. How many vibrations each molecule has, how many symmetry species they fall into, and how many frequencies are infrared active, Raman active, both, or neither. Every column after the first counts frequencies rather than modes, because a degenerate pair is one line in a spectrum. The molecules with a centre of inversion are the ones with nothing in the both column — mutual exclusion as a computed count. Nothing here uses a force constant.

Two structures, two spectra

A linear XY₂ gives two infrared bands, one Raman band and no band in common. A bent XY₂ gives three of each and three in common. Counting settles the shape, without a force constant, an assignment or a single measured frequency.

part 2 · spectra

benzene: 30 vibrations. The vibrational representation, obtained by subtracting the translations and rotations from the full set of Cartesian displacements, with the infrared and Raman activity of each species read off the same character table.

What an absence proves

A band that symmetry forbids is not weak. Its intensity is zero, exactly, by a theorem — while a band that is merely too faint to see is absent for reasons no theorem covers. The two look identical in a spectrum and support completely different conclusions.

part 3 · spectra

phosphorus pentafluoride: 3 environments. The atoms of phosphorus pentafluoride sorted into orbits under its own symmetry group — two atoms are in the same orbit when an operation of the group carries one onto the other, which makes them indistinguishable by any measurement. There are 2 of F, 1 of P, and a spectrum that resolves environments counts those rather than atoms.

A spectrum counts environments, not atoms

Phosphorus pentafluoride has five fluorines in two inequivalent sets, so its magnetic resonance spectrum should show two signals. It shows one — and the reason is not a symmetry the molecule has but a motion faster than the measurement.

part 4 · spectra

methane, substituted 5 ways. CH₄, CH₃D, CH₂D₂, CHD₃, CD₄ — the same molecule with the same force constants, differing only in which nuclei are heavy. Every column is a consequence of which of the parent's operations survive the mass pattern: the surviving set is a subgroup, it is named from its own conjugacy classes, and the vibrations are reduced in it. The allowed and computed columns come from group theory and from the mass-weighted Hessian respectively, and they agree in every row.

A spectrum that changes when only a mass does

Methane has four distinct vibrational frequencies and two infrared bands. Replace two of its hydrogens with deuterium and it has nine and eight — with every force constant identical, every nucleus where it was, and the potential energy surface unchanged.

part 5 · spectra

Mutual exclusion across every group here. The 20 groups with tables here, each with its highest rotation order, whether it has a centre of inversion, which of its representations carry a coordinate, which carry a product of coordinates, and whether any carries both. Every group with a centre excludes, which is a theorem. 1 group without a centre excludes as well — D5h — so the rule does not run backwards, and the counterexample needs a fivefold axis.

Mutual exclusion does not prove a centre

A centrosymmetric molecule shows no band in both its infrared and its Raman spectrum. The rule is a theorem and its converse is read off as though it were part of it — but ferrocene in the gas phase has no centre of inversion and no coincidence either, and the reason is that a fivefold axis separates the coordinates from their products where a threefold or fourfold axis cannot.

part 6 · spectra

Three quarters, exactly, for every mode that is not totally symmetric. The depolarisation ratio of every Raman-active mode of five molecules, computed from a bond-polarisability model. 18 of the 26 sit on three quarters to better than a millionth, and they are exactly the modes that are not totally symmetric: the mean polarisability derivative is a trace, a trace is invariant, and an invariant has no derivative along any other species. The polarised ones below the line are the totally symmetric modes, and where they sit is a property of the model rather than of the group.

The one intensity symmetry does fix

Symmetry says which bands exist and declines to say how strong they are. It makes exactly one exception, and it is a ratio: every Raman band that is not totally symmetric is depolarised by exactly three quarters, whatever the molecule and whatever the model — and methane's symmetric stretch is polarised by exactly zero, because its group is cubic.

part 7 · symmetry

A ratio that measures a distortion, and squares it first. How far ammonia's depolarised bands come off three quarters against how far one of its bonds has been stretched. Undistorted the departure is 3.1e-8, which is the rounding in the stored coordinates rather than a physical effect; at 0.1 Å it is 0.04239, and the slope is 1.999 — the departure goes as the square of the distortion, so a ratio measured to three decimals fixes a length to one and a half.

A ratio that squares what it measures

A depolarised Raman band sits at exactly three quarters because symmetry says its mean polarisability derivative is zero. Distort the molecule and it comes off — by 4.5 × 10⁻⁴ for a hundredth of an ångström and 0.042 for a tenth, going as the square of the distortion, which makes a ratio measured to three decimals a length known to one and a half.

part 8 · spectra

How fast the three quarters goes, along each coordinate. The coefficient of the square, for every non-symmetric mode of three molecules, against the mode's own frequency. A single measurement takes one of these — along a bond stretch — and reports the exponent rather than the size. The sizes span a factor of thirty within methane alone, and the coordinates a molecule is softest along are not systematically the most sensitive: ammonia's stiff pair is five times more sensitive than its soft one.

One number was one direction

The departure of a depolarisation ratio from three quarters goes as the square of a distortion, and the exponent was first measured along one bond stretch. Computed along every non-symmetric coordinate the exponent is always two and the coefficient is not: it spans a factor of thirty inside methane. And the ratio is not preferentially sensitive to the coordinates a molecule is soft along — in two molecules of three the stiffest coordinate is the most sensitive.

part 9 · spectra

Six distortions, and the one the ratio cannot see at all. How far a depolarised band of boron trifluoride comes off three quarters when the bonds are stretched in six different combinations, all at the same size. Five move it. The one that stretches every bond by the same amount moves it by nothing whatever — not a small amount, exactly none — because that distortion keeps every symmetry operation the molecule had, and the band sits at three quarters by its species.

The distortion the ratio cannot see

A depolarisation ratio can be made into a structural probe: break a molecule's symmetry and a band fixed at three quarters comes off it by an amount that depends on the distortion. The question is whether two distortions the ratio can see separately might cancel into one it cannot. They do — and the cancellation is exact, at any size, because the blind direction is the one that keeps the symmetry.

part 10 · spectra

The reading is a function of direction, with a sixty-degree period. The departure of a depolarised band from three quarters, for distortions of equal magnitude pointing all the way round the plane of stretches that sum to zero. It is not one number: it runs from 8.177e-6 to 1.617e-5, a factor of 1.978. The minima are at one bond against another and the maxima at two bonds against one, and the pattern repeats every sixty degrees.

One number was a direction too

The depolarisation probe is exactly blind to the totally symmetric direction, which suggests it reads the distortion's component outside that species. What is left is a plane, and over a circle in it the reading varies by a factor of 1.98 — smallest for one bond against another, largest for two bonds against one, repeating every sixty degrees.

part 11 · spectra

The sum is flat and the maximum is not. Both readings round the circle, each divided by its own average so the two can be drawn together. The maximum varies by 98 per cent; the sum over all four depolarised bands varies by 0.038. A sum cannot be changed by reordering, so if each band's departure is an isotropic quadratic form the sum must be constant — and to four parts in ten thousand it is.

The sum was flat all along

The depolarisation reading varies by a factor of two round a circle in the non-symmetric plane, and the anisotropy may belong to taking a maximum over four bands rather than to the physics. Summing the four instead gives a reading constant to four parts in ten thousand, against a maximum that varies by ninety-eight per cent.

part 12 · spectra

Reversing the distortion changes the answer, which settles the order. How much the sum changes when the distortion is reversed — the same direction taken backwards — at each angle in the plane. Along a basis direction it changes by two parts in ten million, which is nothing. Halfway between them it changes by 7.36e-4, which is the same size as the isotropy residual itself at 5.24e-4. A response with only even powers of the amplitude cannot do that, so the leading anisotropic term is the cubic one and not the quartic.

The suspect that did not fit

The sum over depolarised bands is flat to four parts in ten thousand rather than exactly, and the quartic term is the obvious suspect. Two tests say otherwise. The residual scales as amplitude to the 1.248, which is neither candidate — and reversing a distortion changes the sum by as much as the residual is, which only an odd power can do. The leading term is the cubic, and the suspect was wrong by one order.

part 13 · spectra

Each half has an integer exponent and the mixture does not. On logarithmic axes against the amplitude: the combined residual, the even half's anisotropy and the odd half relative to the mean. The even half is a straight line of slope 2.005. The odd half has slope 0.981 below 0.04 and then bends over. The combined residual, fitted as one power, gives 1.248 — an average of two integers weighted by where the sweep happens to sit, with the halves crossing at 0.084.

Two integers made one exponent

A sum over boron trifluoride's depolarised bands is nearly isotropic, and its residual scaled as the amplitude to the 1.248 — no integer, and a two-term fit left a pattern it could not remove. Averaging each distortion with its reverse splits the residual exactly into an even half that scales as the square, to 2.005, and an odd half that scales as the first power until a fifth-order term turns it over. And the sum was a stand-in: what an unresolved pair of bands would actually show is twenty times less flat.

part 14 · spectra

The shape was the group and the size was not

A depolarisation probe swept round a circle of distortions gives a reading with a sixty-degree period and a largest-over-smallest of about two, and the residual left in the sum over bands scaled as the amplitude to the 1.248. Run the identical probe on ammonia — the same three stretches, the same three-fold axis, the mirror plane gone — and the period and the ratio come back within three per cent, while the departure is a hundred and sixty-nine times larger, the residual twenty-three times, and the exponent is 0.816. The angular shape is the group's. Nothing else is, and the pyramid's residual is not even a power law.

part 15 · spectra

The direction survives until the lines are as wide as the bending pair is split. How much the probe's reading varies round the circle of distortions — largest over smallest — against the line width of the spectrum it is read from, on a logarithmic axis. Resolved, it varies by 1.96. It holds that until the width passes about half a wavenumber, falls as the width approaches the bending pair's 2.8 cm⁻¹ splitting, and by a width of ten wavenumbers varies by one per cent. The stretching pair, split by half a wavenumber, merges first and costs almost nothing, because the largest departure was never its.

What a linewidth leaves of the probe

The depolarisation probe had two limits. Read on each band it varies by a factor of two round a circle of distortions, and read on each pair blended it varies by two thirds of a per cent. A spectrum sits between them, and where it sits can now be computed. For boron trifluoride distorted by two hundredths of an ångström the direction survives until the line width approaches the bending pair's 2.8 cm⁻¹ splitting, not the stretching pair's 0.53. A pair drawn as one peak is still not read as its blend: that takes widths several times the splitting. And the resolution was always the easy half, because the splitting is first order in the distortion and the signal second.

part 16 · spectra

Ammonia's direction goes at a narrower width than boron trifluoride's. How much the probe's reading varies round the circle of distortions — largest over smallest — against the spectrum's line width, for the pyramid and the plane, both distorted by 0.02 Å. Both start near two. The plane's falls to half its excess at 3.48 cm⁻¹, set by its bending pair's 2.82 cm⁻¹ splitting; the pyramid's at 2.56 cm⁻¹, set by its stretching pair's 2.12 — although both the pyramid's pairs are split more than either of the plane's.

The pyramid trades its pairs

Ammonia's depolarisation probe was expected to survive a wider line than boron trifluoride's, because both of its degenerate pairs are split more by the same distortion. It survives a narrower one. On the plane the bending pair carries the reading; on the pyramid the stretching pair does, thirty times over, and its splitting is the smaller of ammonia's two — so the direction halves at 2.6 cm⁻¹ instead of 3.5. What the pyramid keeps is the size. The contrast a measurement has to resolve is 178 times the plane's, and at a ratio precision of one per cent ammonia's direction becomes readable from 0.046 Å of distortion, where boron trifluoride's is unreadable at 0.16.

part 17 · spectra