Molecular Geometry & Bonding
what the shape decides
Series

Rotation — the series

15 essays on one idea, from the one that introduces it to the one that assumes the rest.
  1. carbonyl sulfide: a linear. The principal axes of carbonyl sulfide drawn at its centre of mass, with the moment of inertia about each. Which kind of top this makes it is decided by comparing three numbers, and the point group forces the same answer independently: an axis of order infinity means a linear molecule, with one moment at zero forbids an asymmetric top.

    The rotational spectrum is a moment of inertia

    Every line in a microwave spectrum sits at a multiple of one number, and that number is a conversion constant divided by a sum of mass times distance squared. No bonding argument appears anywhere in it.

    part 1 · spectra
  2. A structure out of a spectrum. Two rotational constants and two bond lengths, three times over, from three pairs of carbonyl sulfide isotopologues. Above them, the same inversion run on moments computed from a known structure, which returns it to twelve figures. The measured pairs disagree with one another by 7.4 milliangstrom, which is the difference between a ground-state average and an equilibrium geometry.

    A bond length out of a spectrum

    A linear triatomic has two bond lengths and one moment of inertia, so one measurement cannot determine it. Substituting an isotope gives a second measurement on the same structure, and two equations in two unknowns have a solution — which comes out differently depending on which isotope is used.

    part 2 · spectra
  3. 7 molecules, three moments each. The principal moments of inertia of water, sulfur dioxide, formaldehyde, boron trifluoride, ammonia, methane, hydrogen peroxide, in u Ų, with the inertial defect and the asymmetry parameter beside them. The defect vanishes exactly for a planar structure and does not for any other, so three numbers computed from the coordinates decide planarity with no model anywhere in the argument. Every classification is checked against the one the molecule's point group forces.

    The moment that is the sum of the other two

    Three numbers computed from the coordinates and the masses decide whether a molecule is flat. For water, sulfur dioxide, formaldehyde, benzene and every other planar structure here the largest moment of inertia is the sum of the other two exactly; for ammonia it misses by 0.76 and for methane by 3.18.

    part 3 · spectra
  4. A microwave constant predicted from an infrared one. For four diatomics: the rotational constant and the stretching frequency, both measured, and the centrifugal distortion constant predicted from them by 4B³/ω² — then the constant a microwave spectroscopist fits to the line positions. The prediction and the fit agree within a few per cent across three orders of magnitude in the quantity, and nothing connects the two measurements except the assumption that the bond stretching under rotation is the same bond that vibrates.

    The rotor that stretches

    A rigid rotor's lines are evenly spaced, and a real molecule's are not — it pulls itself apart as it spins. How much is not a fitting parameter: it follows from the stretching frequency by one relation, and the prediction agrees with the measured constant to a few per cent across four molecules spanning three orders of magnitude.

    part 4 · spectra
  5. ammonia's rotational levels, sorted by K. The rigid rotational levels of ammonia up to J = 4, each drawn at its computed energy and grouped by J. Within a group the levels are pushed apart by the second rotational constant, so it is plainly there in the level pattern.

    The constant a spectrum cannot see

    A symmetric top has two rotational constants and its microwave spectrum reports one of them. Not badly, not with difficulty: ammonia's A of 6.3406 wavenumbers appears in none of its lines at any J and any K, because the term it belongs to cancels exactly out of every transition. The molecule turns about that axis, the energy is real, and the measurement is blind to it.

    part 5 · spectra
  6. water: every level up to J = 4, from a matrix. The rotational levels of water at κ = -0.4322, each J diagonalised in the symmetric-top basis. A symmetric top would show one level per K with everything above K = 0 doubly degenerate; here every degeneracy is split, and the size of each splitting is what the third constant is measured from.

    The top that reports all three

    A symmetric top hides one of its two rotational constants in every line of its spectrum. Break the symmetry and the hiding stops: for water, twenty-three of the twenty-five levels up to J = 4 move when A is changed, and the two that do not are the ground state and the one at B + C. There is no formula for any of them.

    part 6 · spectra
  7. Three parameters, two numbers, and a curve of answers. seven structures of formaldehyde, every one of which reproduces the measured rotational constants A and B exactly. The C=O length runs from 1 to 1.3 ångström, the C–H length from 1.56 down to 0.95, and the HCH angle from 74.58 to 164.47 degrees. The third constant is not a third number: for a planar molecule it is fixed by the other two, and it comes out at 1.14 for every member.

    Three numbers is not a structure

    Formaldehyde's rotational spectrum gives three constants, of which a planar molecule's are only two independent numbers, and its structure has three parameters. Seven structures are computed here that reproduce A and B to the last digit the solver carries: the C=O length runs from 1.000 to 1.300 ångström, the C–H length from 1.557 down to 0.952, and the HCH angle from 74.6 degrees to 164.5.

    part 7 · spectra
  8. Every sign, lost. Formaldehyde in its own principal axes. Open circles are the atoms where they are; filled ones are where Kraitchman's equations put them, from the change in the three moments when each atom in turn is made heavier. The two agree to 7.6e-8 ångström — the equations are an identity for a rigid structure — but they return the square of each coordinate, so the two hydrogens at b = ±0.9348 both come back at +0.9348 and land on the same point.

    The coordinate an isotope reports

    Kraitchman's equations return an atom's position from the change in the moments when that atom alone is made heavier, and for a rigid structure they are an identity — formaldehyde's four atoms come back to a part in ten million. What they return is the square of each coordinate, so both hydrogens at b = ±0.9348 come back at +0.9348; every out-of-plane coordinate comes back imaginary at a moment error of one part in a hundred thousand; and the famous error cancellation, measured at a factor of thirteen, still leaves the answer two and a half times worse than a direct fit.

    part 8 · spectra
  9. The factor of thirteen was generous. An invented error model against the one computed from a force field. Its invented mismatch of five per cent made the correlation between the parent and the substituted species worth a factor of 12; the computed mismatch of 35 per cent makes it worth 2.5. The substitution structure went from being 2.5 times worse than a direct fit to 26, and at the computed size of the correction its worst coordinate is out by 10.7 per cent.

    The correction that was invented

    A standard error model puts the zero-point error in a rotational constant at a few tenths of a per cent, shared between the three moments by invented weights, with the parent and its deuterated form differing by five. Computed from a force field it is 1.88 per cent, one of the three shares is negative, and the mismatch is 35 — so the cancellation the substitution method rests on is worth a factor of 2.5 and not thirteen.

    part 9 · spectra
  10. One expression, four molecules, a factor of eleven. The computed zero-point correction to each molecule's moment of inertia against the expression A²·Σ(1/ν)/I, which has no fitted quantity in it. The dashed line is the mean dimensionless coefficient, 0.6343; the four points lie within 18 per cent of it, on corrections that span a factor of 11.4. The expression is evaluated from a moment of inertia and a list of wavenumbers, which is what a spectroscopist has before doing anything.

    An expression for what was a warning

    The zero-point correction to a moment of inertia comes out at 1.88 per cent where a few tenths had been assumed, and heavy molecules are safer. Written out, the correction is a mean curvature times the sum of reciprocal wavenumbers over the moment — one line, evaluated from things a spectroscopist has before starting. One coefficient serves four molecules whose corrections span a factor of eleven.

    part 10 · spectra
  11. The coefficient each principal axis needs. The dimensionless coefficient the molecule-averaged expression requires, evaluated on each principal axis separately rather than on the mean of the three. Across the twelve axes the positive ones span a factor of 2.33, against the 1.36 the molecule-averaged version spans — and one of them is negative, which no positive constant can be.

    The axis that goes the other way

    One dimensionless coefficient turned a zero-point correction into an expression a spectroscopist could evaluate, and the three principal axes were averaged over to get it. Split by axis it gets worse, not better — the coefficients span 2.3 where the molecule-averaged ones span 1.36 — and water's smallest moment does not grow at all. It shrinks.

    part 11 · spectra
  12. The frame H₂O → HDO turns. H₂O → HDO: the parent's principal axes and the daughter's, drawn on the same nuclei. Two of the three turn by 21.12° and the third does not move at all, because it is the normal to a plane no substitution can tilt. A per-axis comparison between these two species is comparing moments about lines this far apart, which is a rotation of the frame rather than a correction to a number.

    Two moments about two different lines

    Asked axis by axis, the substitution method's near-cancellation gives numbers as large as 163 per cent. The arithmetic is the smaller half of the answer. A principal axis is an eigenvector of a tensor built from the masses, so one deuterium turns water's frame by 21.12° — and the two moments being compared are not moments about the same line.

    part 12 · spectra
  13. The two terms in a vibrationally averaged rotational constant. A rotational constant averages 1/r², not r², so the moment it reports carries +2⟨Δr⟩/rₑ from the anharmonicity and −3⟨Δr²⟩/rₑ² from the harmonic spread. The two have opposite signs in every molecule here, and the anharmonic one — which is exactly zero in any symmetric well and therefore absent from every harmonic force field — is larger by a factor of 1.94 to 2.58.

    The term a harmonic field cannot produce

    The usual zero-point correction to a moment of inertia comes from a harmonic force field, which contains the mean square displacement and nothing else. A rotational constant does not average that. It averages one over r squared, whose leading correction is the mean displacement — zero in any symmetric well — and which enters with the opposite sign and about twice the size.

    part 13 · spectra
  14. A Morse curve's αₑ falls 4 to 15 per cent short of the measurement. The vibration–rotation constant αₑ of each diatomic, averaged over the states of a Morse curve built from its measured ωₑ, ωₑxₑ and rₑ, as a fraction of the tabulated value. H³⁵Cl: 0.27747 against 0.3072 cm⁻¹, ×0.903; D³⁵Cl: 0.10240 against 0.1133 cm⁻¹, ×0.904; ¹²C¹⁶O: 0.01674 against 0.0175 cm⁻¹, ×0.957; H¹⁹F: 0.68164 against 0.798 cm⁻¹, ×0.854. Every one is short, and HCl and DCl — one potential with two masses on it — are short by the same fraction.

    The cubic a Morse curve guesses

    The two terms in a vibrationally averaged rotational constant were computed on Morse curves built from measured constants, and the vibration–rotation constant αₑ is the measurement that tests them. In all four molecules the Morse curve's αₑ is short, by four to fifteen per cent. The averaging is not the error — it matches the closed form to four parts in ten thousand. The curve's cubic is, and the measurement asks for more of exactly the term a harmonic field cannot produce.

    part 14 · spectra
  15. The measured cubic and quartic overshoot what Morse fell short of. Each molecule's αₑ as a fraction of the measured value, from its Morse curve and from a quartic potential built with the cubic and quartic coefficients the measured αₑ and ωₑxₑ imply. Every Morse curve is short, by 4 to 15 per cent. Every quartic is over, by 1 to 5 per cent: the repair moves αₑ past the measurement rather than onto it.

    Two coefficients are not a potential

    A Morse curve built from measured constants gets the vibration–rotation constant αₑ short by four to fifteen per cent, and the measured αₑ and anharmonicity imply the cubic and quartic a real potential should have. Built with exactly those two coefficients and solved, the potential overshoots instead. The reason is that the Morse curve's own series, cut after its quartic, moves αₑ by a sixth to a half of the error being repaired — so a quartic cannot tell whether the shortfall was the cubic.

    part 15 · spectra

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