Molecular Geometry & Bonding
what the shape decides
Concept

Group order — where it appears

The number of operations in a point group, which is what every reduction formula divides by. Counting it correctly is the check that a set of found operations really closed, and getting it wrong is the usual symptom of a drifting axis.

Named by 17 essays across 3 fields — each of them below, with the objects they name alongside it.

ammonia — C3v. The molecule with the point group found from its coordinates rather than looked up: every candidate operation was applied and kept when it permuted the atoms among themselves.

Point groups from coordinates

A molecule's symmetry is not a label to be looked up. It is decidable from the atom positions by searching for the operations that permute them, and the search either finds an operation or it does not.

symmetry · Point group The Td character table. The irreducible representations of the molecule's point group. The class headings carry the number of operations found by generating the group from the coordinates, and those counts were produced before this table was opened.

Character tables and reduction

A molecule's point group is a list of matrices, not a label. Generating them, sorting them into classes, and dividing by the group order turns any set of orbitals into a statement about how many energies there can be.

symmetry · Representation phosphorus pentafluoride — D3h. The molecule with the point group found from its coordinates rather than looked up: every candidate operation was applied and kept when it permuted the atoms among themselves.

Site symmetry, and what it constrains

A molecule's group is not the only group in the problem. Each atom sits at a position with a symmetry of its own, and what that local group permits decides how many kinds of environment a structure really has.

symmetry · Representation phosphorus pentafluoride: 3 environments. The atoms of phosphorus pentafluoride sorted into orbits under its own symmetry group — two atoms are in the same orbit when an operation of the group carries one onto the other, which makes them indistinguishable by any measurement. There are 2 of F, 1 of P, and a spectrum that resolves environments counts those rather than atoms.

A spectrum counts environments, not atoms

Phosphorus pentafluoride has five fluorines in two inequivalent sets, so its magnetic resonance spectrum should show two signals. It shows one — and the reason is not a symmetry the molecule has but a motion faster than the measurement.

spectra · Spectrum The Td character table. The irreducible representations of the molecule's point group. The class headings carry the number of operations found by generating the group from the coordinates, and those counts were produced before this table was opened.

Degeneracy is a group theorem

How many orbitals can share an energy is decided before any energy is computed. The dimensions of a group's irreducible representations are the only degeneracies it permits, and a molecule with no representation larger than one cannot have a degenerate level at all.

symmetry · Representation Oh descending to D4h. Every irreducible representation of Oh restricted to D4h and reduced there — A1g, A2g, Eg, T1g, T2g, A1u, A2u, Eu, T1u, T2u. A representation that arrives in more than one piece is a degeneracy the lower symmetry cannot hold, so a level carrying it must split when the molecule distorts.

Descent in symmetry

Lower a molecule's symmetry and its labels stop being available. Which of them survive, which split, and into what, is decided by restricting characters to the operations that are left — arithmetic, not a table to be looked up.

symmetry · Point group carbon dioxide: D∞h worked in D2h. The vibrations of carbon dioxide, computed in D2h because D∞h has infinitely many operations and the reduction formula divides by the order of the group. Each constructed operation is checked against the molecule before use. The count must come out at 3N−5 rather than 3N−6 — 4 for 3 atoms — because rotation about the molecular axis moves no atom and is not a motion of the molecule at all.

An infinite group, worked in a finite one

A linear molecule has infinitely many symmetry operations, and every formula in character theory divides by the number of them. The standard device is to work in a finite subgroup — and it is worth computing what that trade costs rather than putting it in a footnote.

symmetry · Point group methane, substituted 5 ways. CH₄, CH₃D, CH₂D₂, CHD₃, CD₄ — the same molecule with the same force constants, differing only in which nuclei are heavy. Every column is a consequence of which of the parent's operations survive the mass pattern: the surviving set is a subgroup, it is named from its own conjugacy classes, and the vibrations are reduced in it. The allowed and computed columns come from group theory and from the mass-weighted Hessian respectively, and they agree in every row.

A spectrum that changes when only a mass does

Methane has four distinct vibrational frequencies and two infrared bands. Replace two of its hydrogens with deuterium and it has nine and eight — with every force constant identical, every nucleus where it was, and the potential energy surface unchanged.

spectra · Spectrum How many groups a molecule can fall to. For each molecule, every subgroup of its point group, found by closing subsets of the operations recovered from its atom positions — beside the number the corresponding abstract group is known to have. The two agree in all 4 cases. The last column is how many of those subgroups this site holds a character table for, which is a minority in every row but the first.

Every group a molecule can fall to

A distortion takes a molecule's symmetry away, and what is left is not a free choice — it has to be a group. Closing subsets of methane's twenty-four operations returns thirty of them, which is exactly the number the symmetric group on four letters has.

symmetry · Point group Why a character table has the rows it has. All 20 groups this site defines, with the two counts that fix the shape of every character table: the number of representations equals the number of classes, and the sum of the squares of their dimensions equals the order of the group. Neither column pair differs anywhere in the table, and there is no room for another row in any of them.

Why a character table stops where it stops

A character table is square, and both of its dimensions are forced. The number of representations equals the number of classes, the squares of their dimensions sum to the order of the group, and between them there is no room for another row.

symmetry · Representation ammonia: 3 valence bands. The measured valence photoelectron bands of ammonia, each labelled with the symmetry species of the orbital it comes from, and beside them the species the valence basis spans — the central atom's s and p functions and one s on each ligand, reduced in the molecule's own group. A band carrying a species the reduction does not produce would stop this figure being drawn.

Fewer bands than electrons

Methane has eight valence electrons and two photoelectron bands. Ammonia has eight and three; water has eight and four. The count is not of electrons, not of bonds and not of orbitals — it is of the symmetry species the occupied orbitals fall into, and it falls as the symmetry rises.

spectra · Photoelectron The group of benzene, against how much error is forgiven. Four distortions of benzene, none larger than six hundredths of an ångström, and the point group the search reports for each at nine tolerances. The exact structure is D6h at every one of them, so the staircases below belong to the distortions rather than to the search. The cell marked in warning colour is a step at which the order of the group named at the tighter tolerance does not divide the order of the one named at the looser: C6h of order 12, so the sequence is not a chain of subgroups.

The tolerance is a decision

A measured structure is never exactly symmetric, so assigning it a point group means deciding how much error to forgive. Sweep that decision from a thousandth of an ångström to a third of one and benzene, bent by a hundredth, is assigned five different groups — and at one step the group named is not even a supergroup of the one named before it.

symmetry · Point group Three counts for each molecule, and the barrier between them. Four molecules, with the number of operations available to each: the point group, which is what a rigid rotation or reflection can do; the feasible group, which adds whatever a crossable barrier makes available; and the whole permutation-inversion group, which is every rearrangement of identical nuclei whether a molecule can reach it or not. The middle column is the one that describes a real spectrum, and it equals the first only when nothing moves.

The group of a molecule that will not hold still

A point group is a group of rotations of space, and it presupposes a structure for them to act on. Ethane has no one structure — its methyl groups turn billions of times a second — and the group that describes its spectrum has thirty-six elements where the point group has twelve, out of two thousand eight hundred and eighty conceivable.

symmetry · Point group Every set of point groups here that shares a table. Found by comparing character matrices rather than named: five sets among the tabulated groups, at orders 2, 4, 6, 8, 20. The smallest is the most startling — a mirror plane, a centre of inversion and a twofold axis all have the two-row table with entries 1, 1 and 1, −1, and one of the three describes a chiral molecule. The largest is the eclipsed and staggered conformers of ferrocene, which are one molecule at two temperatures.

One table, three groups

A mirror plane, a centre of inversion and a twofold axis have the same character table — two rows, entries 1, 1 and 1, −1 — and one of the three describes a chiral molecule. A character table is a property of an abstract group; a point group is that plus an action on space, and the action is what a molecule has.

symmetry · Representation How far benzene is from its own group, against how far it has been pushed. The measure — the distance to the nearest structure with the ideal group — against the size of the distortion, for two ways of distorting the same molecule. Each curve is smooth and quadratic; the markers on it are where the point-group search changes its verdict, which happens at one step and says nothing about the steps either side of it.

How much symmetry is left

A point group is a verdict and every real structure fails it. Two distortions of benzene that are two per cent apart in how far they sit from D6h need tolerances 1.88 times apart before the search will call either of them D6h — and one tolerance, applied to six molecules, admits amounts of asymmetry differing by a factor of fifty-six.

symmetry · Point group Where the explanation gives a negative number of vibrations. The usual formula against the answer, for the 15 molecules with internal coordinates here. It is right for 7 of them and wrong for 8, and for sulfur hexafluoride, benzene and both ferrocenes it predicts a negative number of totally symmetric vibrations — which is the clearest possible sign that the quantity being subtracted is not the one that should be.

A formula that predicts minus eleven vibrations

A molecule's count of totally symmetric vibrations is often explained as one per orbit of internal coordinates, less one per redundancy, with methane as the worked example. Computed for fifteen molecules it is right for seven and wrong for eight — and for sulfur hexafluoride, benzene and both ferrocenes it returns a negative number. Two independent corrections turn it into an identity.

symmetry · Point group Eighteen paths, two hundred and seventy geometries, one gap. Every one-parameter path between two arrangements of the same ligand count, each sampled at 15 geometries, with each geometry coloured by whether its group is named and tabulated, refused by the finder's tolerance, or a finite group with no table. The one gap is a group of order 10 at the pentagonal-pyramidal end of two paths — C5v, which no table here reaches. The path with a linear end is excluded, since a continuous group is declined deliberately rather than missing.

The gap found on purpose

A twist between two coordination arrangements passes through a point group with no character table among the twenty in use, and that was found by accident. Running every path between the arrangements — eighteen of them, two hundred and seventy geometries — finds exactly one more gap, at a group of order ten. It also finds something the search was not looking for: a group without a table had been reported as an infinite group.

beyond · Hypervalency

Named alongside it

The objects these essays reach for when they reach for this one.

Point groupSymmetry operationCharacter tableDegeneracyIrreducible representationsReduction formulaConjugacy classConventionModel limitSelection rulesSubgroupChirality

All concepts